Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq10744 389 2e-103 seq19899 217 6e-52 seq15490 205 4e-48 seq46863 105 3e-18 >seq10744 Length=4730 Score = 389 bits (430), Expect = 2e-103 Identities = 532/743 (72%), Gaps = 0/743 (0%) Strand=Plus/Plus Query 21786 TCGATGCAGCTCGTCGTGACGTCGCCACCCTACAACATCGGCAAGAGGTACGAAAAGCGG 21845 || ||| ||||| |||| ||||| || |||||||| || |||||| || |||||||| Sbjct 461 TCTATGAAGCTCATCGTCACGTCACCGCCCTACAATATTGGCAAGTCTTATGAAAAGCGC 520 Query 21846 TCGCCGCTGGACGCCTACGTGCAGGCCCAGGCGCAGGTCATCTCCGAGTGCGTGCGGCTT 21905 |||||||| || ||||| ||| |||||||| || ||||| || ||||| || || Sbjct 521 TCGCCGCTCGATCAATACGTTAAGGATCAGGCGCAAGTGATCTCGGAATGCGTTCGACTC 580 Query 21906 CTCAGCCCGCACGGCTCGCTCTGCTGGCAGGTCGGCAATCACGTGCAGAAAGGCGAGATA 21965 | ||| |||| || || |||||||| || || ||||| || | || ||||| ||| Sbjct 581 TTGCACCCAAACGGATCTCTTTGCTGGCAAGTGGGTAATCATGTCGATAAGGGCGAAATA 640 Query 21966 TTCCCGCTCGACACCGTGCTCTATCCGGTCTTTCGCGAGCACGGCCTGAAGCTACGGAAT 22025 ||||| | || ||||| |||| | ||| || || || ||||||| | ||| Sbjct 641 TTCCCCTTAGATCTTGTGCTGTATCATCTTTTTAAAGATCATGGTTTGAAGCTTAGAAAT 700 Query 22026 CGCGTGGTGTGGCATTTCGAGCACGGCCTGCACTGTTCGAACCGCCTGTCCGGCCGCTAC 22085 || | | ||||| || || ||||| |||| || || ||| |||| || ||||| Sbjct 701 CGGATCATCTGGCACTTTGAACACGGTTTGCATTGCAGCAAGCGCATGTCAGGGCGCTAT 760 Query 22086 GAGACGATCCTCTGGTTCACCAAGACCGACGACTACGTTTTCAACCTCGACCCGATCCGG 22145 ||||| ||| | |||||||||||| ||| |||||| |||| | || || |||||||| Sbjct 761 GAGACTATCATGTGGTTCACCAAGGGCGATGACTACACTTTCCATCTGGATCCGATCCGC 820 Query 22146 GTGCCATCGAAATACCCCGGAAAGAAATACTTCAAAGGGCCGAAGGCTGGTCAGCTCTCC 22205 || || || || || || ||| || || | |||||| || || || || ||||| || Sbjct 821 GTCCCGTCTAAGTATCCTCAAAAAAAGTATTACAAAGGCCCAAAAGCAGGACAGCTTTCG 880 Query 22206 TGCAATCCGCTGGGAAAAAACCCAGGCGACGTGTGGATTTTCCCCAACGTCAAGAACAAC 22265 | ||||| || || ||||| || |||| || ||| |||| |||||||| ||||||||| Sbjct 881 GGTAATCCACTTGGCAAAAATCCCAGCGATGTTTGGGTTTTTCCCAACGTGAAGAACAAC 940 Query 22266 CACGTCGAAAAGACCGACCATCCATGCCAGTTCCCGGTCGAGCTGGTCGAGCGGTTGGTG 22325 || || || || ||| ||||| |||||||| || | ||| |||||||||| | || Sbjct 941 CATGTTGAGAAAACCATTCATCCCTGCCAGTTTCCTATTGAGTTGGTCGAGCGTCTTGTT 1000 Query 22326 CTGTCGCTGACCGAGCCCGGTGACGCGGTGCTCGACCCGTACATGGGCGTGGGCTCGTCG 22385 ||||| ||||||| || ||| || | || || |||||||| || || |||||| Sbjct 1001 TTGTCGATGACCGATGAAGGGGACAGTGTTTTTGATCCTTACATGGGGGTCGGATCGTCG 1060 Query 22386 GTCGTCGCTGCCCTCAAGCACGACCGCCTCGGGTACGGCTGCGACGTCGTGAAGGAGTAC 22445 || || | || || ||||| | || || ||||| || ||||| ||||| ||||| Sbjct 1061 GTTGTTGGAGCGCTAAAGCATGGTCGTAAAGGTTACGGTTGTGACGTGGTGAAAGAGTAT 1120 Query 22446 GTCGATGCCGCCTGGGAGCGCGTGCACCGGCTTCGCGCCGGCACACTCCAGACGCGCCCC 22505 ||||||| || ||| | ||||| || |||| | | ||||| | || || ||||| Sbjct 1121 GTCGATGTTGCGTGGAAACGCGTTCATGAGCTTAGATCAGGCACGTTGCAAACCCGCCCG 1180 Query 22506 ATGCACAAGCCCGTCTATGACCC 22528 ||| | |||||||| ||||| || Sbjct 1181 ATGGATAAGCCCGTTTATGATCC 1203 Score = 205 bits (226), Expect = 4e-48 Identities = 420/616 (68%), Gaps = 14/616 (2%) Strand=Plus/Plus Query 22628 TGCGGATCGTCGAGCACTACTCGCATCTCAACGGCCTCGAGTTCCTGCTGGTGCACAAGC 22687 |||| || || ||||| || |||||||| ||||| || |||| | ||||||| |||| Sbjct 1229 TGCGAATAGTTGAGCATTATTCGCATCTTAACGGTCTTGAGTATTTAATGGTGCATAAGC 1288 Query 22688 CGAAGCTCTGGAAAGAGATTCAGGAGGTCATCAAGAACGTCGACGCGACAAAGTTGCGGA 22747 | || ||| | || |||||| |||| || ||| ||||| || || | || | Sbjct 1289 CAGCCCTGTGGGACGAAATTCAGCAGGTGATTGCGAAAGTCGATGCTACGCAATTCAAAA 1348 Query 22748 CAAAGCAGTCGAAAGAAACGCGGTCGATGGGCGAAATGCTCTATTCGCCCCGAGCGATGA 22807 | ||| || ||||||| || || |||||||| ||||| | ||||| Sbjct 1349 CCAAGGTTTCCAAAGAAAAAACCATGACTGGTAGGATGCTCTACGCGCCCATCGAGATGA 1408 Query 22808 ACAAGGCGATCGACG-AGGGCTTC--GCGCGGCATAAGTGGGGCGAGCGGCGCATCTCGT 22864 |||||||||| || | || | ||| |||||| | |||| ||| | | || | Sbjct 1409 ACAAGGCGATGGATGCAGAGTTTCAGGCGCGGGGT---TGGGCAGAGTCCAGAACGTCAT 1465 Query 22865 ATTGGGTCACGTCCGACGCCCGCCTGATCCGCAAGACTCTGTTCATGGGACCGGATCAGC 22924 ||||||| || || || ||||||||| || || || |||| || | ||| Sbjct 1466 ATTGGGTGACAAAGGATGCAAACCTGATCCGAAAAACCATGACGATGGACGCGAAGGAGC 1525 Query 22925 AAAAGGCCGAGATC---GAAGGCGCCGGAAAGAAGCCGCTGGCGTCCTACAACCAGACCG 22981 | ||| |||||| || ||| | ||| | || | || | ||| || || | Sbjct 1526 AGAAGCAAGAGATCATTGATAGCGGCC-AAACA--CCTATATTTTCATTCAATCAAACAG 1582 Query 22982 ATTTCGTGAAGGAGCGCGTCGCCGTCGAGGTGCAGTTCGGCAAGTACGCCTTCGTCGCCT 23041 | || |||||||| ||||| || || ||||| ||||| || ||||| || ||||| || | Sbjct 1583 ACTTTGTGAAGGATCGCGTTGCGGTGGAGGTTCAGTTTGGAAAGTATGCGTTCGTTGCTT 1642 Query 23042 ACGACCTGTTCGTGAAGCATCTGGCGTTCTACGTCGGCGACGTGATCGACGTCGGCGTGG 23101 ||| ||||||| || || |||| || | |||||| |||||||||||| | ||| | | Sbjct 1643 TTGACTTGTTCGTCAAACACATGGCATTTTTCGTCGGTGACGTGATCGACCTGGGCATCG 1702 Query 23102 AAATCCTGCCGATGAAGGAGCTCCA-GCAGCAGATGTCATCGGGCGTCGGCTACTACGAG 23160 |||| |||| ||||| ||||| || |||| | |||||||| ||| || |||||||| Sbjct 1703 AAATTTTGCCCATGAAAGAGCTACAGGCAG-AAATGTCATCTGGCCCAGGTTACTACGAA 1761 Query 23161 GGCGAGCTGTACAACCTGATCCGCGAAGGCCGCGGCGTGCCGGCCGTGCCACTCATCGTG 23220 ||||| || |||||||| || | | || || || || || ||||| | || | Sbjct 1762 GGCGAACTCTACAACCTAATTAGACAGGGACGTGGAAGCCCTGCTGTGCCTTTGGTCATT 1821 Query 23221 ATCGGGATCGCTCCGT 23236 ||||||||||| |||| Sbjct 1822 ATCGGGATCGCGCCGT 1837 >seq19899 Length=3433 Score = 217 bits (240), Expect = 6e-52 Identities = 402/579 (69%), Gaps = 22/579 (4%) Strand=Plus/Plus Query 22628 TGCGGATCGTCGAGCACTACTCGCATCTCAACGGCCTCGAGTTCCTGCTGGTGCACAAGC 22687 |||| || || ||||| || || ||||| ||||||||||||| || ||||||| |||| Sbjct 1782 TGCGAATAGTGGAGCATTATTCACATCTGAACGGCCTCGAGTATCTTATGGTGCATAAGC 1841 Query 22688 CGAAGCTCTG--GAAAGAGATTCAGGAGGTCATCAAGAACGTCGACGCGACAAAGTTGCG 22745 | ||||||| | | || || || || || ||| |||||||| || || || || Sbjct 1842 C--AGCTCTGTGGGACGAAATCCAAGAAGTGATCGCAAACGTCGATGCAACGAAATTCAA 1899 Query 22746 GACAAAGCAGTCGAAAGAAACGCGGTCGATGGGCG---AAATGCTCTATTCGCCCCGAGC 22802 || ||| || ||||||| | |||| || | ||||||||| || || | | Sbjct 1900 AACCAAGGTTTCCAAAGAAAAAA---CCATGGCCGGTAAGATGCTCTAT--GCTCCTATC 1954 Query 22803 GA--TGAACAAGGCGATCGACG-AGGGCTTCGCGCGGCATAAGTGGGGCGAGCGGCGCAT 22859 || ||||||||||||| || | || | ||| ||| | | |||| ||| | | Sbjct 1955 GAAATGAACAAGGCGATGGATGCAGAGTTTCAAGCG-CGTGGATGGGCAGAGTCTAGAAC 2013 Query 22860 CTCGTATTGGGTCACGTCCGACGCCCGCCTGATCCGCAAGACTCTGTTCATGGGACCGGA 22919 || |||||||| || || || ||||||||||||| || || |||| ||| | Sbjct 2014 GTCATATTGGGTGACCAAGGATGCGAGCCTGATCCGCAAAACCATGACGATGGATCCGAA 2073 Query 22920 TCAGCAAAAGGCCGAGATC---GAAGGCGCCGGAAAGAAGCCGCTGGCGTCCTACAACCA 22976 | || ||| |||||| || ||| | ||| | || | || | |||||| Sbjct 2074 AGAACAGAAGCAGGAGATCATTGATAGCGG-GCAAACA--CCTATCTTTTCATTCAACCA 2130 Query 22977 GACCGATTTCGTGAAGGAGCGCGTCGCCGTCGAGGTGCAGTTCGGCAAGTACGCCTTCGT 23036 ||| |||||||| ||||| || ||||| || ||||| |||||||| || || ||||| || Sbjct 2131 GACGGATTTCGTCAAGGATCGTGTCGCAGTTGAGGTTCAGTTCGGAAAATATGCCTTTGT 2190 Query 23037 CGCCTACGACCTGTTCGTGAAGCATCTGGCGTTCTACGTCGGCGACGTGATCGACGTCGG 23096 |||| || |||| || || ||| |||| |||| || || |||||||| ||| | || Sbjct 2191 TGCCTTTGATTTGTTTGTAAAACATATGGCTTTCTTTGTTGGTGACGTGATTGACTTGGG 2250 Query 23097 CGTGGAAATCCTGCCGATGAAGGAGCTCCAGCAGCAGATGTCATCGGGCGTCGGCTACTA 23156 | | || || ||||| ||||| ||||| ||| | |||||||| ||| || ||||| Sbjct 2251 CATCGAGATTCTGCCCATGAAAGAGCTTCAGGCTGAAATGTCATCTGGCCCAGGTTACTA 2310 Query 23157 CGAGGGCGAGCTGTACAACCTGATCCGCGAAGGCCGCGG 23195 ||||||||||| |||||| | ||| | | || ||||| Sbjct 2311 TGAGGGCGAGCTCTACAACTTAATCAGGCAGGGACGCGG 2349 Score = 214 bits (236), Expect = 7e-51 Identities = 292/405 (72%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 22125 TTCAACCTCGACCCGATCCGGGTGCCATCGAAATACCC-CGGAAAGAAATACTTCAAAGG 22183 |||||||| || || ||||| || ||||||||||| | |||| ||||||| |||||| Sbjct 1352 TTCAACCTTGATCCTATCCGTCCCCCGTCGAAATACCCTCAGAAA-AAATACTACAAAGG 1410 Query 22184 GCCGAAGGCTGGTCAGCTCTCCTGCAATCCGCTGGGAAAAAACCCAGGCGACGTGTGGAT 22243 || ||||| || ||||| || | |||||| | || || |||||| |||| || ||| | Sbjct 1411 CCCTAAGGCGGGGCAGCTTTCGGGTAATCCGTTAGGTAAGAACCCAAGCGATGTATGGGT 1470 Query 22244 TTTCCCCAACGTCAAGAACAACCACGTCGAAAAGACCGACCATCCATGCCAGTTCCCGGT 22303 || |||||||| |||||||| || |||||||| || |||||| ||||| || || || Sbjct 1471 ATTTCCCAACGTGAAGAACAATCATGTCGAAAAAACAATCCATCCGTGCCAATTTCCTGT 1530 Query 22304 CGAGCTGGTCGAGCGGTTGGTGCTGTCGCTGACCGAGCCCGGTGACGCGGTGCTCGACCC 22363 |||||| || ||||| | || ||||| |||| || || || || |||| || Sbjct 1531 CGAGCTTGTGGAGCGTCTCGTTTTGTCGATGACTGATGAGGGGGATCGTGTATTCGATCC 1590 Query 22364 GTACATGGGCGTGGGCTCGTCGGTCGTCGCTGCCCTCAAGCACGACCGCCTCGGGTACGG 22423 || | || || || || ||||| || || || |||||| | | || || || || Sbjct 1591 TTATTTAGGTGTTGGTTCTTCGGTGGTTGCCGCGCTCAAGAATGGTCGTGAGGGCTATGG 1650 Query 22424 CTGCGACGTCGTGAAGGAGTACGTCGATGCCGCCTGGGAGCGCGTGCACCGGCTTCGCGC 22483 || || || |||||||||||||| ||| || ||||||||||| || | |||| | | Sbjct 1651 TTGTGATGTGGTGAAGGAGTACGTTGATATTGCGTGGGAGCGCGTTCATCAGCTTAGGTC 1710 Query 22484 CGGCACACTCCAGACGCGCCCCATGCACAAGCCCGTCTATGACCC 22528 || || | || || || || ||| | || ||||| ||||| || Sbjct 1711 TGGAACGTTACAAACTCGTCCGATGGATAAACCCGTGTATGATCC 1755 >seq15490 Length=3436 Score = 205 bits (226), Expect = 4e-48 Identities = 331/476 (70%), Gaps = 0/476 (0%) Strand=Plus/Minus Query 21786 TCGATGCAGCTCGTCGTGACGTCGCCACCCTACAACATCGGCAAGAGGTACGAAAAGCGG 21845 |||||| | ||| |||| || || ||||| || ||||| || ||| ||||| || || Sbjct 3320 TCGATGAAACTCATCGTTACCTCACCACCATATAACATTGGTAAGTCCTACGAGAAACGT 3261 Query 21846 TCGCCGCTGGACGCCTACGTGCAGGCCCAGGCGCAGGTCATCTCCGAGTGCGTGCGGCTT 21905 | |||| || || ||||| || ||||| || ||||| || || ||| |||| Sbjct 3260 GCATCGCTTGAGAATTATGTGCAAAATCAAGCGCAAGTGATCTCAGAATGTGTGAGGCTC 3201 Query 21906 CTCAGCCCGCACGGCTCGCTCTGCTGGCAGGTCGGCAATCACGTGCAGAAAGGCGAGATA 21965 | || | || || | || |||||||| || || || ||||| || || || ||| Sbjct 3200 ATGCATCCAAAGGGATCTATTTGTTGGCAGGTTGGAAACCATGTGCAAAAGGGTGAAATA 3141 Query 21966 TTCCCGCTCGACACCGTGCTCTATCCGGTCTTTCGCGAGCACGGCCTGAAGCTACGGAAT 22025 || || || || | | || |||| |||| || || || || || ||| | || Sbjct 3140 TTTCCTCTGGATATTATCCTTTATCACCTCTTCAAAGATCATGGACTAAAACTAAGAAAC 3081 Query 22026 CGCGTGGTGTGGCATTTCGAGCACGGCCTGCACTGTTCGAACCGCCTGTCCGGCCGCTAC 22085 || | | ||||||| || || || || || ||||| || ||||| || || || || Sbjct 3080 CGAATTATCTGGCATTATGAACATGGTCTTCATTGTTCCAAACGCCTTTCTGGTCGTTAT 3021 Query 22086 GAGACGATCCTCTGGTTCACCAAGACCGACGACTACGTTTTCAACCTCGACCCGATCCGG 22145 || || || | |||||||| ||| | || |||||| |||||||| || || ||||| Sbjct 3020 GAAACAATTATGTGGTTCACAAAGTCAGATGACTACACGTTCAACCTTGATCCAATCCGA 2961 Query 22146 GTGCCATCGAAATACCCCGGAAAGAAATACTTCAAAGGGCCGAAGGCTGGTCAGCTCTCC 22205 |||||||| ||||| || ||||||||| |||| || || || ||||||||| | || Sbjct 2960 GTGCCATCAAAATATCCACAAAAGAAATATTTCAGGGGCCCTAAAGCTGGTCAGATATCA 2901 Query 22206 TGCAATCCGCTGGGAAAAAACCCAGGCGACGTGTGGATTTTCCCCAACGTCAAGAA 22261 ||||||| |||| || ||||| | || || ||||||||||| || || || || Sbjct 2900 GGCAATCCAATGGGCAAGAACCCCAGTGATGTTTGGATTTTCCCTAATGTGAAAAA 2845 >seq46863 Length=1618 Score = 105 bits (116), Expect = 3e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23002 GCCGTCGAGGTGCAGTTCGGCAAGTACGCCTTCGTCGCCTACGACCTGTTCGTGAAGCAT 23061 || ||||| || || || || || || | || || || | ||| | || || || ||| Sbjct 1381 GCAGTCGAAGTCCAATTTGGAAAATATTCTTTTGTGGCATTTGACTTATTTGTTAAACAT 1440 Query 23062 CTGGCGTTCTACGTCGGCGACGTGATCGACGTCGGCGTGGAAATCCTGCCGATGAAGGAG 23121 |||| || | || || |||||||||||| | || | ||||| ||||| ||||| ||| Sbjct 1441 ATGGCTTTTTTTGTTGGAGACGTGATCGACTTGGGTATTGAAATACTGCCTATGAAAGAG 1500 Query 23122 CTCCA-GCAGCAGATGTCATCGGGCGTCGGCTACTACGAGGGCGAGCTGTACAACCTGAT 23180 || || |||| |||||||||| || || ||||| |||||||| ||||| ||||| || Sbjct 1501 CTTCAGGCAG-AGATGTCATCAGGTCCGGGGTACTATGAGGGCGAACTGTATAACCTTAT 1559 Query 23181 CCGCGAAGGCCGCGGCGTGCCGGCCGTGCC 23210 | | | || || ||| ||||| || || Sbjct 1560 CAGGCAGGGACGTGGCAGCCCGGCGGTACC 1589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197644507383972