Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4449 168 5e-37 seq10185 156 3e-33 seq56942 129 5e-25 seq4760 123 2e-23 seq32255 111 1e-19 seq2705 104 2e-17 seq32606 91.5 1e-13 >seq4449 Length=67262 Score = 168 bits (186), Expect = 5e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| || || ||||| | |||||||||||||| |||||||| || | | Sbjct 64507 CCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAG 64448 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| || || || ||||||||||||||||||||||| || ||| Sbjct 64447 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGA 64388 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| || ||||| || ||| ||| |||| | ||| ||||| | || || Sbjct 64387 ATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACC 64328 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||||| |||||||| |||| || || || || ||||||||| Sbjct 64327 TCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCATG 64280 >seq10185 Length=35228 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | ||| || | || | |||||| || || ||||| || ||||| || || | Sbjct 2537 TTCCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAG 2596 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| |||||||||||||| ||||| |||||||| || ||||| || | Sbjct 2597 ATAATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTG 2656 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| |||||||||||||||||||| ||||||| | || | ||| || || | ||| | Sbjct 2657 GAATACCTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTA 2716 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | ||||| ||||| | |||||||||||| || ||||| Sbjct 2717 CCTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCAT 2765 >seq56942 Length=2534 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| ||||| || ||||| || ||||| |||||||| ||||| |||| | || | | Sbjct 269 ACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGACAATGTGCGTCC 210 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | || || || || || |||| ||| || ||||| ||||| || || ||||| Sbjct 209 ATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGTATACCCTCTTT 150 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| ||| ||| | || | ||||| || | ||| ||||| || || | Sbjct 149 ATCTTGAATTTTCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAACTTCCAGCGTAAT 90 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || || || | ||||| ||||| || ||||| Sbjct 89 CGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 >seq4760 Length=7449 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || ||||| | |||||||| || || | | | ||| |||||||| Sbjct 2058 ATGAAGTGTTGAATCTTTCTAGATATTGTAGTCCGCTAATATGCGTCCATTTTCCAATTG 1999 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| |||||||| ||||| || || ||||| ||||||||||||| |||||| Sbjct 1998 CTTACCAGCAAAAATCAAACGTTGTTGCTCTGGTGGAATACCTTCTTTATCTTAAATTTT 1939 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||| | |||| ||| || || | ||| | || | ||| | | ||| | || Sbjct 1938 AGCTTTTATATTTTCGGTAGTATCTGAAGGTTCTAGCTCCA-AGTTAATGGTTTTCTCGT 1880 Query 101446 TAA-AGTTTTTACAAATATCTGCAT 101469 ||| |||||||||||| || ||||| Sbjct 1879 TAAGAGTTTTTACAAAGATTTGCAT 1855 >seq32255 Length=22131 Score = 111 bits (122), Expect = 1e-19 Identities = 174/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCC 13714 ||||| || ||||| || | | |||||||| ||||| ||||| |||| | ||||| Sbjct 3795 AATTTGCGCTTACATCCCTGATAATTCATGAAACGTATCTTACCGAAGATGGCACGCTCA 3736 Query 13715 ATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGA 13774 |||| | | || || ||||| || |||||||| || || |||| || | ||| Sbjct 3735 GCCCAGCCCTGGTCATGCACTCCGCCAATGGACCACATACAGCCAACATAGCCACTTGGA 3676 Query 13775 TCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTGT- 13833 ||||||||||| || || |||||||| || || | ||||||| | | || |||| Sbjct 3675 TCGCGTCCATCTAAGCTATATTTGTCATTCAACAAAATGGCGT--ACTCCAGTGCCTGTT 3618 Query 13834 -AGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGCA 13892 ||||| | |||||| | || || || |||||||| || | || | | ||||||| Sbjct 3617 CCGGCGATTCTGTCCATTCGAGAATCTTCTTCGCCCAATACATGCGCAAAAACCCGTGCA 3558 Query 13893 TTTTGCC 13899 ||||||| Sbjct 3557 TTTTGCC 3551 >seq2705 Length=26899 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||||||||| ||| ||| | || ||||| || ||| |||| ||||| || | ||||||| Sbjct 26029 TCCAATTGCTAACCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATCT 26088 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || ||||| ||||||| | || | |||||| || | ||| || | | || | ||| Sbjct 26089 TGGATTTTAGATTTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGTT 26148 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||| | |||||||||||| || ||||| Sbjct 26149 TTCCCGGGAAGAGTTTTTACAAAGATTTGCAT 26180 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 ||||| ||| ||| | || ||||| || ||| |||| ||||| || | ||||||||| || Sbjct 26520 TTGCTAACCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATCTTGGAT 26579 Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442 ||| ||||||| | || | |||||| || | ||| || | | || | ||||| || Sbjct 26580 TTTAGATTTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGTTTTCCC 26639 Query 101443 GGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||||||||||| || ||||| Sbjct 26640 GGGAAGAGTTTTTACAAAGATTTGCAT 26666 >seq32606 Length=18579 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/123 (78%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGT-TCTGGC-ATCGTCCAAT 101323 |||||| || || |||| || ||||| | || | ||| | | || | ||| |||||| Sbjct 7232 ATGAAGTGTTGACGCTTTCTGGATATTAAAGTCAG--ATAATGTGTGTCCATCTTCCAAT 7175 Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 |||||||| ||||| |||||||| || || || || ||||| |||||||||||||||| | Sbjct 7174 TGCTTACCAGCAAAAATCAAACGTTGCTGCTCCGGTGGAATACCTTCTTTATCTTGAACT 7115 Query 101384 TTT 101386 ||| Sbjct 7114 TTT 7112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395981695711938