Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq17122 141 7e-29 seq4449 122 7e-23 seq10185 100 2e-16 >seq17122 Length=8340 Score = 141 bits (156), Expect = 7e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 9082 TCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGA 9141 |||||||| ||||| ||||| | || || ||||||||||| ||| ||||||||| Sbjct 2294 TCACAAATGAATTGCGCAATGCGATCGCCGCGCTTCACGACAAATTCTTCATCGGAATGA 2235 Query 9142 TTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACG 9201 |||||||| || || || | || || | || || || |||| || |||||||| || Sbjct 2234 TTGAACAGTACAACGCCTAAATTGCCGCGATAGTCTTCGTCGACAACGCCAGCACCGACA 2175 Query 9202 TCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCATCCCACC 9261 |||||||| | |||||| || ||||| ||||| ||||| || |||||||| | ||| | Sbjct 2174 TCGATGAAATTCTTGACAGCCAGTCCTGAGCGTGGCGCAATACGACCGTATGAGCCCTCT 2115 Query 9262 GGTAATTGCACCCGCAAGTCGGTCATGACCA 9292 || | |||||| ||||||| || | |||| Sbjct 2114 GGCACTTGCACTTGCAAGTCCGTTTTCACCA 2084 >seq4449 Length=67262 Score = 122 bits (134), Expect = 7e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | ||| |||||||||||||| | || |||||||| |||||||| |||| Sbjct 64509 CGCCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAG 64450 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || | || |||| ||| || || |||||||||| ||||||||||| | | Sbjct 64449 AGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAG 64390 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| ||||| ||||| |||||| ||| ||| | | || || || | ||| | Sbjct 64389 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAA 64330 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTACGT 48777 |||| | || || ||||| ||||| | || || || || |||||||| ||| | || Sbjct 64329 CCTCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCATGTTGTTTCAGT 64270 Query 48778 GT 48779 || Sbjct 64269 GT 64268 >seq10185 Length=35228 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||| ||| || || |||||| || ||||| || ||||||| | || | || || Sbjct 2556 CACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGATAATGTGCGTCCATCTTC 2615 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 ||| |||||||| ||||| |||| || || ||||| | |||| || || || || Sbjct 2616 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTATCTTG 2675 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| || ||||||| | | || || || | || ||||||| ||||| ||||| Sbjct 2676 AATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTACCTCCAAGGTAATAGTTTT 2735 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||||||||| || ||||| Sbjct 2736 CCCGGTAAGAGTTTTTACAAAGATTTGCAT 2765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380652381781182