Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4167 271 5e-67 seq10474 179 2e-39 seq22686 125 5e-23 seq4449 125 5e-23 seq10185 122 6e-22 seq37138 96.9 2e-14 seq4760 87.8 1e-11 >seq4167 Length=34597 Score = 271 bits (300), Expect = 5e-67 Identities = 396/552 (72%), Gaps = 6/552 (1%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| ||||||||||||| ||||| || ||| || || | ||||| ||| | || || Sbjct 5897 TGCAGTTGGTATTGATTTGGGAACAACCTACTCGTGCGTGGGTGTTTTCCAACACGGCAA 5838 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||| |||||||| || || |||||| | ||||||||||| ||||| | || || Sbjct 5837 AGTTGAAATTATTGCCAACGATCAGGGTAATCGTACAACACCATCGTATGTAGCCTTCAC 5778 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| ||||| | | | ||||| |||||||| ||| |||||| || ||||| || Sbjct 5777 TGAGACTGAGCGTTTGATTGGTGATGCTGCCAAAAATCAAGTAGCTATGAATCCAACCAA 5718 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 |||||||| ||||| || | |||||||| ||||| || || |||| | |||| || | Sbjct 5717 CACTATTTTCGATGCCAAGCGTTTGATTGGCCGTAAATTCGAGGATAGCGCTGTACAGGC 5658 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 |||||| |||||||| ||| | || | | |||| ||| |||||| | || ||| Sbjct 5657 CGATATGAAGCATTGGCCATTTGAAGTAGTTAGCGTTGATGGCAAACCAAAAATTCAAGT 5598 Query 474628 AATACACGCAGGTGA-AACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | || | ||| || | ||| | ||| || || |||| || ||||||||||| Sbjct 5597 TTTCTACAAGGATGAGAAGAAGACATTCTTC-CCTGAGGAAATCTCATCAATGGTTTTGT 5539 Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAAT 474744 | || ||||| |||| || ||| | ||| |||| ||| | || | |||| || || Sbjct 5538 CAAAGATGAAGGAAACTGCTGAG-GCTTAT-TTGGGCAAAACTGTCTCAAATGCTGTCAT 5481 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 || |||||||| || || |||||||| || |||||||| || |||||||| || || Sbjct 5480 CACAGTTCCAGCCTACTTCAATGATTCACAGCGTCAAGCTACCAAAGATGCCGGCGCTAT 5421 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||| || | ||||| || ||||| || || ||||| || || || || | || ||||| Sbjct 5420 TGCTGGCTTGAATGTGTTGCGTATCATCAACGAACCTACTGCTGCTGCCATCGCCTATGG 5361 Query 474865 TCTTGATAAGAA 474876 | ||||| || Sbjct 5360 CTTGGATAAAAA 5349 >seq10474 Length=16671 Score = 179 bits (198), Expect = 2e-39 Identities = 346/498 (69%), Gaps = 17/498 (3%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||| || |||||||| ||| | | |||||||| |||||| | ||||| Sbjct 9226 GTTGAAATCATTGCTAACGACCAAGGCAATCGCATCACACCATCGTATGTTGCGTTTACC 9285 Query 474449 G---AAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 | | ||| | | | || || |||||||| ||| ||||| || | ||||| | Sbjct 9286 GCCGATGGTGAGCGTTTAATCGGTGATGCTGCCAAAAATCAATTGACAACGAATCCAGAA 9345 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || |||| ||||||||| | |||||||| ||| | | || |||| ||| ||| Sbjct 9346 AACACAGTTTTCGATGCTAAACGTTTGATTGGGCGTGAATGGACAGACACCAATGTTCAA 9405 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGAT--AAATGTTGGTGGTAAACCATATAT-- 474621 |||||| | || || |||||| | ||| | |||||| |||| Sbjct 9406 CATGATATCAAATTCTTCCCCTTCAAGGTGGTCGAAAAGAACTCC--AAACCACATATTT 9463 Query 474622 -AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGG 474680 || |||| | |||||| | ||| | | | ||| | || ||| |||| || | |||| Sbjct 9464 CAGTGGCAAC-CTCGCAGG-GTAACAAGATA-TTTGCGCCCGAAGAAATCTCCGCTATGG 9520 Query 474681 TTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAG-TAACTGATGC 474738 |||| | ||| ||||| | ||||| ||| | ||| |||| |||||| | || | || Sbjct 9521 TTTTGGGCAAGATGAAGGAGACCGCTGAGG-CTTAT-TTGGGTAAGAAGGTGACACACGC 9578 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || |||| || ||||| || ||||||||| | ||||||||||| || |||||||| || Sbjct 9579 TGTCGTTACGGTGCCAGCCTACTTTAATGATGCACAACGTCAAGCCACCAAAGATGCTGG 9638 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 ||||| || | |||||| | || ||||| ||||| || || || ||||| |||| Sbjct 9639 CGTCATTGCTGGATTGAATGTTATGCGCATTATCAATGAGCCCACCGCTGCCGCTATTGC 9698 Query 474859 TTATGGTCTTGATAAGAA 474876 |||||| | |||||||| Sbjct 9699 CTATGGTTTGGATAAGAA 9716 Score = 122 bits (134), Expect = 6e-22 Identities = 255/371 (69%), Gaps = 12/371 (3%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| ||||||||||| |||||||| |||||||| ||||| | | || |||||||| | Sbjct 10240 AATCCCGATGAAGCTGTCGCATATGGTGCTGCTGTACAAGCTGGTGTTCTATCAGGTGA- 10298 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTT-GACGTAACTCCACTTTCATTAGGTCT 475911 || ||| || | | ||||| ||||| || || | |||| | | | ||| | Sbjct 10299 ----ACAAGATAC-AGACGCCATTGT-GTTGTTGGATGTCAATCCATTGACCATGGGTAT 10352 Query 475912 TGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA 475971 ||| |||||||| || | ||||| || | ||| | || || ||| || | ||| Sbjct 10353 TGAGACAGTTGGCGGTGTAATGACCAAGTTAATTCCACGCAACACCGTTATTCC-TACAA 10411 Query 475972 A-AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCT 476030 | |||||| || | || || ||| ||| ||||||||| ||||| ||||| || ||| Sbjct 10412 AGAAATCACAAATCTTCTCGACTGCTTCCGATAATCAACACACTGTCACCATTCAGGTCT 10471 Query 476031 TTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGA-A 476089 ||||||||| | | |||||||| || | | || | || || |||| Sbjct 10472 ACGAAGGTGAACGTCCCATGACTAAAGACAACCATTTGTTGGGTAAATTCGAT-TTGACT 10530 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| || || || | || |||| ||||||||||| |||| || || |||||| Sbjct 10531 GGCATTCCACCAGCGCCACGTGGCATTCCACAAATTGAAGTGTCTTTCGAGATCGATGCA 10590 Query 476150 AATGGTATTCT 476160 || || || || Sbjct 10591 AACGGCATACT 10601 >seq22686 Length=27107 Score = 125 bits (138), Expect = 5e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| ||| | ||||| ||||| ||||| |||||||| ||| | ||||| || ||||||| Sbjct 5130 ATGCGGTAGTAACTGTACCAGCGTATTTCAATGATTCACAAAGGCAAGCCACAAAAGATG 5071 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || |||||| ||| | ||||| |||| |||||||||||||||| ||||| || | Sbjct 5070 CTGGCCAAATTGCTGGTTTAAATGTCCTACGAGTTATTAATGAACCAACGGCAGCTGCTC 5011 Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAAA 474886 | ||||||||| | ||||| | | ||| ||| Sbjct 5010 TAGCTTATGGTATGGATAAAACTGATGATAAA 4979 >seq4449 Length=67262 Score = 125 bits (138), Expect = 5e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| | || | ||| | ||| |||||| | ||| || |||| || || Sbjct 64502 ACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGGGT 64443 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || || || |||||||| || | ||| |||||||| ||||||||||| Sbjct 64442 GCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCC 64383 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 || ||||| |||||||| ||||||| ||| |||||||||| | | | ||||| Sbjct 64382 CTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAG 64323 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || || ||||||||||| || || Sbjct 64322 AGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTG 64284 >seq10185 Length=35228 Score = 122 bits (134), Expect = 6e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617 ||||| || ||||||||||| ||||| | |||||| |||| || || | | Sbjct 2551 CGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGATAATGTGCGTCCA 2610 Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | |||||| ||||||||||| | |||||| ||||| || ||||| ||||| || Sbjct 2611 TCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTA 2670 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 |||||||| || ||| ||| || |||||||| | || || | ||||||| Sbjct 2671 TCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTACCTCCAAGGTAATA 2730 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| ||||| || || || ||||| Sbjct 2731 GTTTTCCCGGTAAGAGTTTTTACAAAGATTTG 2762 >seq37138 Length=11844 Score = 96.9 bits (106), Expect = 2e-14 Identities = 396/609 (65%), Gaps = 23/609 (4%) Strand=Plus/Plus Query 592283 GGATAATAATTTACATCAATAATATTATTTAAATTTCTTGTAATAATTCTTGCGACCTTG 592342 ||||||||||||| ||| || || ||||| |||||| |||||| | || | | || | Sbjct 4364 GGATAATAATTTATATCTATGATTTTATTCAAATTTTTTGTAACAGTTTTAGTTACTTCT 4423 Query 592343 TACAATTTATTATAATCAAACTCTGGAACACCGTTTTCATGAATAATAAATTTAGGTAA- 592401 | | || | | ||||| | | || || | | | ||| || | | ||| Sbjct 4424 TTAAGCTTTTGAAAATCATA-------AGAC--TTATTAGCAGAAATGAACAT-GTTAAG 4473 Query 592402 ACAAATTGATGACAAATTACAAACTGCATAT-TCATCTGCAGATGAGAATTCTACAATTT 592460 | ||| |||| | ||| ||||| || ||| ||||||| | ||| |||| ||||||| Sbjct 4474 AGCAATAGATGCTAGATTGCAAACGGC-TATCTCATCTGGCGCTGAATATTCGACAATTT 4532 Query 592461 CACAACAAAGATTTGAGCCATTAATTACGCCTATATTAATCTGATTTGATTTTTGATTGA 592520 || ||| | ||| || || || || ||||| | ||||| |||| || Sbjct 4533 CAGTACACAAATTGCTGCATTTGATGGTACCAATATTTTTTTGATTACTTTTTCTGTTAC 4592 Query 592521 TAGCATCTTTAAACAATATGTATGGTACACCTGTTTCAATTTGTGTTTCCATTATTTTAA 592580 || ||| ||| |||| || || ||| |||||||| | ||| | ||| || || || Sbjct 4593 AAGAATCCTTATACAACATATACGGTGTTCCTGTTTCTACTTGGGCTTCAATGATAGCAA 4652 Query 592581 ACCATAAATCTCTT-GCTTTGATTTGTTTTATAAATCTACCCTCATTTTCATATTTAAGA 592639 |||| || | || ||||| |||| | | || | || || ||||||||||| | Sbjct 4653 ACCA-AAGTGACTGAGCTTTAATTTTCCTATTGAAACGGCCTTCTTTTTCATATTTTTCA 4711 Query 592640 TA-AGCTTTATTAAATTCTTCACCATATTTTCCTACAATATCTGGACA-TTGTGATGGAC 592697 || | || | | ||||||||| || | | | ||| ||||||| ||||| |||| Sbjct 4712 TATAACTCT-TCAAATTCTTCTCCCCAAACTTCATCAAGCCCTGGACATTTGTG-GGGAC 4769 Query 592698 ACATAAGTGACCAATTTTCATCTTTTTCAACACGATCCATGAAAATATTATTAATCATTA 592757 ||||||||||||| | |||| ||| || || |||||| | || | |||| | Sbjct 4770 ACATAAGTGACCAGTCGCCATCAGATTCTACGCGTCTCATGAACAGATCAGGAATCCAGA 4829 Query 592758 ATCCAAGGAATAAATCTCTGGCTCTTTCCGTT--TCAGCACCAGTATTTTTCTTTAGATC 592815 | ||||| ||||| ||||| | ||| || || |||||||| |||| || Sbjct 4830 GGGCGTAAAATAAGTCTCTTGCTCTGT--GTTCCTCTTTTCCTGTATTTTTTTTTAAGTC 4887 Query 592816 AAGGAAGAAAAATATATCACCATGCCAAGGTTCAATAAATACCGCAAATGAACCAGCTCT 592875 | || || ||||| ||||||||| || | ||| ||||| | ||||| || Sbjct 4888 TAAAAACTCGAAAATATCCGAATGCCAAGGCTCTAAGTATATAGCAAACGCACCAGGCCT 4947 Query 592876 TTTACCACC 592884 ||| || || Sbjct 4948 TTTTCCGCC 4956 >seq4760 Length=7449 Score = 87.8 bits (96), Expect = 1e-11 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 480559 GGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTAT 480618 |||| || ||||||||||| ||||| | | ||| || || |||| | | || Sbjct 2068 GGAGCACCAGATGAAGTGTTGAATCTTTCTAGATATTGTAGTCCGCTAATATGCGTCCAT 2009 Query 480619 CTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGT 480678 ||| | |||||| ||||||||||| | ||||||||| || || ||||| ||||| || | Sbjct 2008 TTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGCTCTGGTGGAATACCTTCTTTAT 1949 Query 480679 CTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATA 480737 ||| ||| || ||| | | ||| ||||||| | | | || | ||| | |||| Sbjct 1948 CTTAAATTTTAGCTTTTATATTTTCGGTAGTATCTGAAGGTTCTAGCTCCAA-GTTAATG 1890 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || | ||||| || || || ||||| Sbjct 1889 GTTTTCTCGTTAAGAGTTTTTACAAAGATTTG 1858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265543997662232