Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq10185 159 6e-34 seq4760 127 4e-24 seq56942 109 1e-18 seq2705 105 1e-17 >seq10185 Length=35228 Score = 159 bits (176), Expect = 6e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || |||||||| | ||| | |||||| ||||||||||| Sbjct 2536 ATTCCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCA 2595 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| || | ||| || ||||| || || |||||||| || | || ||||| || Sbjct 2596 GATAATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGT 2655 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| ||||| | ||||| ||| |||||||| |||| || Sbjct 2656 GGAATACCTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCT 2715 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 || || | || |||||||| || || || ||||||||||| ||||||||||| || Sbjct 2716 ACCTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCATTTTGTT 2771 >seq4760 Length=7449 Score = 127 bits (140), Expect = 4e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | ||| | || |||||||| | ||| | ||||| | ||||| ||||| Sbjct 2084 ATACCACCACAAAATTGGAGCACCAGATGAAGTGTTGAATCTTTCTAGATATTGTAGTCC 2025 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | ||| | | || || ||||| || || |||||||| || | ||||| || || Sbjct 2024 GCTAATATGCGTCCATTTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGCTCTGGT 1965 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||||| ||||| | |||||||||| ||||||| |||| || Sbjct 1964 GGAATACCTTCTTTATCTTAAATTTTAGCTTTTATATTTTCGGTAGTATCTGAAGGTTCT 1905 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTA-GCGTTTTTACAAATATTTGCATTTT 193363 | || | ||||| | ||| | |||| | ||||||||||| ||||||||||| Sbjct 1904 AGCTCCA-AGTTAATGGTTTTCTCGTTAAGAGTTTTTACAAAGATTTGCATTTT 1852 >seq56942 Length=2534 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| || || | ||| || | ||||| || || || || | | Sbjct 235 ATGTTGTAGTCGGACAATGTGCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGT 176 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| || ||||| || ||||||||||| ||||| | ||| | ||| ||| || Sbjct 175 TGCTGATCTGGCGGTATACCCTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTG 116 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | |||||||| || || || || ||||| || |||||||| ||||| |||||| Sbjct 115 TCCGATGGTTCAACTTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGC 56 Query 193359 ATTTT 193363 ||||| Sbjct 55 ATTTT 51 >seq2705 Length=26899 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | ||| || || ||||| || | ||| | |||| | |||||| |||| Sbjct 25951 ATTCCACCACGCAAGCGGAGCACCAGTTGAAGTGTTGACTCTCTCTGGATATTAGAGTCA 26010 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | ||| || || || ||||| | || ||| ||||||| | || ||| | || Sbjct 26011 GTTAATGTGTGTCCATTTTCCAATTGCTAACCAGCAGAAATTAAACGTTGCTGAACGGGT 26070 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || | ||||||||| ||||| | ||||| ||| ||||| ||||||| || Sbjct 26071 GGAATACCATGTTTATCTTGGATTTTAGATTTTACATTCTCGATAGTGTCGGAAGGTTCT 26130 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || | | || || ||||| || | || ||||||||||| ||||||||||| Sbjct 26131 ACCCCCAAGGTAATGGTTTTCCCGGGAAGAGTTTTTACAAAGATTTGCATTTT 26183 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||| ||||||| | || ||| | || || || || | ||||||||| ||||| | | Sbjct 26527 CCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATCTTGGATTTTAGAT 26586 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| ||||| ||||||| || || | | || || ||||| || | || Sbjct 26587 TTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGTTTTCCCGGGAAGA 26646 Query 193341 GTTTTTACAAATATTTGCATTTT 193363 ||||||||||| ||||||||||| Sbjct 26647 GTTTTTACAAAGATTTGCATTTT 26669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898963532894880