Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq10185 141 1e-28 seq56942 109 8e-19 seq4760 96.9 5e-15 >seq10185 Length=35228 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || ||||||||||| ||| | ||||| | || || ||||||||||| || || || ||| Sbjct 2771 AACAAAATGCAAATCTTTGTAAAAACTCTTACCGGGAAAACTATTACCTTGGAGGTAGAA 2712 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| |||| ||| || || ||| |||||| |||||||||||||| || || ||| Sbjct 2711 CCTTCGGATACTATCGAGAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCA 2652 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || || ||| | ||||||| ||| |||||||| | |||||| | || ||||| || Sbjct 2651 GATCAGCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGACGCACATTATCTGAC 2592 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 |||||||| |||||| | || |||||| | ||| Sbjct 2591 TATAATATCCAGAAAGAGTCAACACTTCATCTGGTG 2556 >seq56942 Length=2534 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | ||||| ||||||| || || ||||| | ||||| ||| Sbjct 51 AAAATGCAAATCTTTGTGAAAACGCTGACTGGTAAGACGATTACGCTGGAAGTTGAACCA 110 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || ||| ||||| ||||||||||| || ||||| ||||| Sbjct 111 TCGGACACGATTGAGAATGTCAAAGCGAAAATTCAAGATAAAGAGGGTATACCGCCAGAT 170 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | |||| | || || || |||||||||||| | || || || || || Sbjct 171 CAGCAACGTCTGATCTTCGCTGGCAAACAGCTCGAAGATGGACGCACATTGTCCGACTAC 230 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || ||| || || |||||||||| || || || Sbjct 231 AACATACAAAAGGAATCGACGCTTCACTTGGTTTT 265 >seq4760 Length=7449 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | ||||| | | | ||||| |||| || || | ||| | Sbjct 1852 AAAATGCAAATCTTTGTAAAAACTCTTAACGAGAAAACCATTAACTTGGAGCTAGAACCT 1911 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || ||| | ||| |||||| ||||||||||||| || || ||||| Sbjct 1912 TCAGATACTACCGAAAATATAAAAGCTAAAATTTAAGATAAAGAAGGTATTCCACCAGAG 1971 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||||| ||| |||||||| | ||| || | | ||| | || || Sbjct 1972 CAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAAATGGACGCATATTAGCGGACTAC 2031 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||||| | ||||| | || |||||| | ||| Sbjct 2032 AATATCTAGAAAGATTCAACACTTCATCTGGTG 2064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731309977194400