Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq10185 174 3e-38 seq4760 132 9e-26 seq32606 122 2e-22 seq2705 114 3e-20 seq56942 109 1e-18 >seq10185 Length=35228 Score = 174 bits (192), Expect = 3e-38 Identities = 187/245 (76%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTC-TAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATA 192357 ||| |||||| ||||| | |||| || | || | ||| | || | |||||| |||| Sbjct 2528 GTTCAATAATTCCACCACGTAAG-CGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATA 2586 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 ||||| ||||||||||| ||| |||| |||||||| ||||||||||| || || | || Sbjct 2587 TTATAGTCAGATAATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGC 2646 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 ||||| ||||| || |||||||||||||| |||||| ||||||||| |||| ||| Sbjct 2647 TGATCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCC 2706 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | |||||| || | ||||| ||||| || || | ||||| | ||| || |||||| Sbjct 2707 GAAGGTTCTACCTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCATT 2766 Query 192538 TTATT 192542 || || Sbjct 2767 TTGTT 2771 >seq4760 Length=7449 Score = 132 bits (146), Expect = 9e-26 Identities = 176/242 (73%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||||||||| | || | | || | ||| | || | ||||| |||||| Sbjct 2092 GTTCAATAATACCACCACAAAATTGGAGCACCAGATGAAGTGTTGAATCTTTCTAGATAT 2033 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || | |||| | ||| ||| |||||||| ||||||||||| || || | |||| Sbjct 2032 TGTAGTCCGCTAATATGCGTCCATTTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTT 1973 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | || ||||| || ||||||||||||| |||||| ||||| ||| ||| ||||| Sbjct 1972 GCTCTGGTGGAATACCTTCTTTATCTTAAATTTTAGCTTTTATATTTTCGGTAGTATCTG 1913 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATAAATATCTGCATT 192537 | | ||||| || | |||||||||| | ||||| ||||| | ||| || |||||| Sbjct 1912 AAGGTTCTAGCTCCAAGTTAATGGTTTT-CTCGTTAAGAGTTTTTACAAAGATTTGCATT 1854 Query 192538 TT 192539 || Sbjct 1853 TT 1852 >seq32606 Length=18579 Score = 122 bits (134), Expect = 2e-22 Identities = 176/242 (73%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||||||||| | || | | | || | ||| | || | | |||| ||||| Sbjct 7266 GTTCAATAATACCACCACAAAAATGGAGCACCAGATGAAGTGTTGACGCTTTCTGGATAT 7207 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 || | ||||||||||| || |||| |||||||| ||||||||||| || || | || | Sbjct 7206 TAAAGTCAGATAATGTGTGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCT 7147 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | || ||||| || |||||||||||||| | ||| | || ||||| | | || | | Sbjct 7146 GCTCCGGTGGAATACCTTCTTTATCTTGAACTTT-TCATTAACATTCTCGACACAAGCCG 7088 Query 192479 ACGATTCTA-CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | | ||||| |||| || ||||||||||| || | |||| || | ||| || || ||| Sbjct 7087 AAGGTTCTACCTTCAAG-GTAATGGTTTT-CCCGATAATAGATTCA-AAAGATTTGGATT 7031 Query 192538 TT 192539 || Sbjct 7030 TT 7029 >seq2705 Length=26899 Score = 114 bits (126), Expect = 3e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||||||| | |||| |||||| || ||| |||||||| | ||||||| | ||||| | Sbjct 25998 GATATTAGAGTCAGTTAATGTGTGTCCATTTTCCAATTGCTAACCAGCAGAAATTAAACG 26057 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || ||| | ||||| || || | ||||||||| |||||| ||||||||| |||| Sbjct 26058 TTGCTGAACGGGTGGAATACCATGTTTATCTTGGATTTTAGATTTTACATTCTCGATAGT 26117 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || | |||||| | | ||||||||||| || | | ||||| | ||| || || Sbjct 26118 GTCGGAAGGTTCTACCCCCAAGGTAATGGTTTTCCCGGGAAGAGTTTTTACAAAGATTTG 26177 Query 192534 CATTTT 192539 |||||| Sbjct 26178 CATTTT 26183 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 192390 TTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449 ||| | ||||||| | ||||| | || ||| | ||||| || || | ||||||||| || Sbjct 26520 TTGCTAACCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATCTTGGAT 26579 Query 192450 TTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 192509 |||| ||||||||| |||| || || | |||||| | | ||||||||||| || Sbjct 26580 TTTAGATTTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGTTTTCCC 26639 Query 192510 AGTTAATGTTTTAATAAATATCTGCATTTT 192539 | | ||||| | ||| || |||||||| Sbjct 26640 GGGAAGAGTTTTTACAAAGATTTGCATTTT 26669 >seq56942 Length=2534 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || || || ||||| ||| |||| || | ||||| ||||| ||||| | | Sbjct 235 ATGTTGTAGTCGGACAATGTGCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGT 176 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || ||||| || ||||||||||| ||||| ||| ||||| || | Sbjct 175 TGCTGATCTGGCGGTATACCCTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTG 116 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| ||||| || ||||| || |||||||| | ||||| | ||| || ||| Sbjct 115 TCCGATGGTTCAACTTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGC 56 Query 192535 ATTTT 192539 ||||| Sbjct 55 ATTTT 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983705093025900