Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10185 147 4e-30 seq4760 118 2e-21 seq2705 95.1 2e-14 seq32606 89.7 9e-13 seq56942 86.0 1e-11 >seq10185 Length=35228 Score = 147 bits (162), Expect = 4e-30 Identities = 178/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 171837 ATAATACCACCTC-TAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATA 171895 ||||| ||||| | |||| || | || | ||| | || | |||||| |||||||| Sbjct 2533 ATAATTCCACCACGTAAG-CGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATA 2591 Query 171896 ATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 || ||||| | ||| | || |||||||| |||||||||||||| || | || || || Sbjct 2592 GTCAGATAATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATC 2651 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 ||||| || |||||||||||||| |||||| ||||||||| |||||||| || | Sbjct 2652 TGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGG 2711 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 |||||| || | ||||| ||||| || || | ||||| | || || |||||||| || Sbjct 2712 TTCTACCTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCATTTTGTT 2771 >seq4760 Length=7449 Score = 118 bits (130), Expect = 2e-21 Identities = 170/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||||||||| | || | | | || | ||| | || | ||||| | ||||| || Sbjct 2087 ATAATACCACCACAAAATTGGAGCACCAGATGAAGTGTTGAATCTTTCTAGATATTGTAG 2028 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || | ||| ||| | | |||||||| |||||||||||||| || | ||||| || Sbjct 2027 TCCGCTAATATGCGTCCATTTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGCTCT 1968 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||||||||||| |||||| ||||| ||| |||||||||| | | Sbjct 1967 GGTGGAATACCTTCTTTATCTTAAATTTTAGCTTTTATATTTTCGGTAGTATCTGAAGGT 1908 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATGAATATCTGCATTTT 172072 |||| || | |||||||||| | ||||| ||||| | || || |||||||| Sbjct 1907 TCTAGCTCCAAGTTAATGGTTTT-CTCGTTAAGAGTTTTTACAAAGATTTGCATTTT 1852 >seq2705 Length=26899 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 |||||||| | ||||||| ||||||| | || || | ||||| || || | ||||||| Sbjct 26029 TCCAATTGCTAACCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATCT 26088 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037 || |||||| ||||||||| ||||| || || | |||||| | | ||||||||| Sbjct 26089 TGGATTTTAGATTTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGTT 26148 Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || | | ||||| | || || |||||||| Sbjct 26149 TTCCCGGGAAGAGTTTTTACAAAGATTTGCATTTT 26183 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171923 TTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTAT 171982 ||| | ||||||| ||||||| | || || | ||||| || || | ||||||||| || Sbjct 26520 TTGCTAACCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATCTTGGAT 26579 Query 171983 TTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 172042 |||| ||||||||| ||||| || || | |||||| | | ||||||||||| || Sbjct 26580 TTTAGATTTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGTTTTCCC 26639 Query 172043 AGTTAATGTTTTAATGAATATCTGCATTTT 172072 | | ||||| | || || |||||||| Sbjct 26640 GGGAAGAGTTTTTACAAAGATTTGCATTTT 26669 >seq32606 Length=18579 Score = 89.7 bits (98), Expect = 9e-13 Identities = 167/238 (70%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||||||||| | || | | || | ||| | || | | |||| |||||| | Sbjct 7261 ATAATACCACCACAAAAATGGAGCACCAGATGAAGTGTTGACGCTTTCTGGATATTAAAG 7202 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||| | || | || |||||||| |||||||||||||| || | || || || Sbjct 7201 TCAGATAATGTGTGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGCTCC 7142 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||||||||| | ||| | || ||||| | | | | || | | Sbjct 7141 GGTGGAATACCTTCTTTATCTTGAACTTT-TCATTAACATTCTCGACACAAGCCGAAGGT 7083 Query 172017 TCTA-CTTCTAGAGTAATGGTTTTACCAGTTAAT-GTTTTAATGAATATCTGCATTTT 172072 |||| |||| || ||||||||||| || | |||| | || || || || || ||||| Sbjct 7082 TCTACCTTCAAG-GTAATGGTTTT-CCCGATAATAGATTCAA--AAGATTTGGATTTT 7029 >seq56942 Length=2534 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || || || | ||| | || || | ||||| ||||| || || | | Sbjct 235 ATGTTGTAGTCGGACAATGTGCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGT 176 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || ||||| || ||||||||||| ||||| ||| ||||| || || Sbjct 175 TGCTGATCTGGCGGTATACCCTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTG 116 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| ||||| || ||||| || |||||||| | ||||| | || || ||| Sbjct 115 TCCGATGGTTCAACTTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGC 56 Query 172068 ATTTT 172072 ||||| Sbjct 55 ATTTT 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904440923437200