Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq34587 140 1e-27 seq28107 105 2e-17 seq13918 100 8e-16 seq1795 84.2 6e-11 >seq34587 Length=11896 Score = 140 bits (154), Expect = 1e-27 Identities = 198/273 (73%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || |||||||||||||||||||| ||| || || || ||||| ||| Sbjct 770 TCCATAGCCTTTATCAAACGACGCTGAATATAACCGGTTTCAGCAGTCTTGACAGCAGTA 711 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 ||||| ||||| |||||||||||||||| || || | | ||| || ||| | || Sbjct 710 TCAATCAGACCCTCACGACCACCCATAGCGTGAAAATAGAACTCGGATGG-CGTCAAACC 652 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 ||| | ||| | ||||| || ||||| | ||| || || ||||||| ||| | Sbjct 651 GGCAAGGTACGAGTTTTCAACAAAGCCACGTGACTCAGGACCGTAATCGTC---CTTAAT 595 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || |||||||| || | || |||||||||| |||||||| || || |||||||| Sbjct 594 GAAATGTGGCAGAGTACGCTTGCGGAAGCCGTATGGAATACGCTTGCCCTCGACGTTCTG 535 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | || | ||| | |||||| ||||| Sbjct 534 TTGACCGACACAAGCAATAACCTGCGAGATATT 502 >seq28107 Length=66327 Score = 105 bits (116), Expect = 2e-17 Identities = 214/315 (68%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || || |||||||| || |||||||||| | || || | || || | || |||||| Sbjct 22697 CCCACCGCATCAATCTCATCAATGAAAAGAATGCATGGCGCATGTTTGCGTGCCATTGCA 22638 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | ||||| || | ||||| || ||| ||||||| | ||| || || | Sbjct 22637 AACATATCACGGACACGTGACGGTCCAACGCCCACAAACATTTCCAAAAACTCTGAGCCA 22578 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || |||||| | |||||||||||| || ||| || | || || | || || Sbjct 22577 GACACGGTAATGAACGGTACATTTGCTTCTCCCGCTGTCGCTTTAGCGAGTAACGTTTTG 22518 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 || || || |||||||| || | | |||||||||| ||| || || | || Sbjct 22517 CCAGTGCCTGGTGGTCCAGTCAACATGGCACCCTTTGGTATTTTCGCACCCAAATCAATA 22458 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT-GCCTCATC 289328 || | | ||| |||||| || | |||| ||| || ||| |||||| ||||| || Sbjct 22457 TACTGTTGCGGGTTCTTTAGGAAATTGACAAACTCCATAATTTC-TATTTTCGCCTCTTC 22399 Query 289329 ACATCCTGCTACATC 289343 ||| || || ||||| Sbjct 22398 ACAGCCGGCAACATC 22384 >seq13918 Length=82260 Score = 100 bits (110), Expect = 8e-16 Identities = 150/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 289162 AATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGT 289221 |||| ||||||||||| ||||| || || || |||| || || ||||| || || || Sbjct 14620 AATGGGACATTTGCTTCACCTGCAACAGCTCTTGCCAAGAGAGTTTTACCGGTACCTGGG 14561 Query 289222 GGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT--TATATTTCTCAG 289279 || || |||||| || || || |||| |||| | ||| ||| | |||| || | Sbjct 14560 GGACCAACTAATAATACACCTTTCGGTAATTTTCCTCCA--AGATTGGAGAATTTTTCCG 14503 Query 289280 GGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTA 289339 | | || | || ||||| | || | ||||| | |||||||||||||||||| | Sbjct 14502 GATTTTTAAGGAACTCTACGACCTCTTTTAGTTCTTGCTTTGCCTCATCACATCCTTTCA 14443 Query 289340 CATCAGCAAAAGTAATATTAATATCGTTCT 289369 ||||| ||||||||| || ||| || |||| Sbjct 14442 CATCATCAAAAGTAACATGAATTTC-TTCT 14414 >seq1795 Length=30150 Score = 84.2 bits (92), Expect = 6e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| || ||| ||| ||||| |||||||| |||||||| || ||||||||||| Sbjct 10010 GCACCGTGCGATATCTGACAGTCACGTTCCATTTCGCCGAAACGCAGCCCACCATCGCGT 9951 Query 251545 GCCCTACCCTC 251555 ||||||||||| Sbjct 9950 GCCCTACCCTC 9940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470659098331258