Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq8032 125 6e-24 seq30035 114 1e-20 seq4449 95.1 1e-14 seq10185 82.4 6e-11 >seq8032 Length=2190 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 ||||| || |||| |||||| ||||| | |||||| || | ||| || || | Sbjct 1320 GGCGGATTCTTCAATATGAACGTGTTCACCTTATGATTGACCTTGAGCAGCCCATGGAAG 1379 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 |||||||||||||| ||| |||| | | || || ||||| || | | |||||| Sbjct 1380 CCGCATGCTTTGCACGACTGCGAGATTGTCTGATTCTTTGCGGAAACCGTCAAGTCAGTC 1439 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 || || ||||| ||||| |||||||| || |||||||| || || || ||||| ||||| Sbjct 1440 TCGGGATTGTCGCATTCGGGACACAATACGAACTTGCGTATAAAGCCGTCAAGTAGGTCT 1499 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 || | ||| | ||| |||||||| || || ||||| || ||||| Sbjct 1500 TGCAGTTTACATGCGTCATGGGAGCCATTTACAATGAAACGCTCGTT 1546 >seq30035 Length=2002 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||||||||| ||| ||||| ||||||| |||||| ||||| ||||| || || || | Sbjct 186 TTGTAATCGAACTGAGTTTGTGCGCCCAACTCGCAACCGAAATACTTGGTTGGATAGGTT 245 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || ||||| || | || || | ||| | |||||||||||| || || || ||||| Sbjct 246 GCTGGACGACCGATGGCGCGCGCTACTTCAGCCATGTTGACGATAACTGTTTTAATGCCA 305 Query 34552 TTGCCCTTTCCTTCGACCTTGGC 34574 |||||||| |||||||| ||||| Sbjct 306 TTGCCCTTGCCTTCGACTTTGGC 328 >seq4449 Length=67262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || || || |||| ||||||||||| || | || ||||| Sbjct 64278 AACATGCAGATCTTCGTTAAGACCCTAACGGGCAAAACCATCACTCTTGAGGTTGAGCCC 64337 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| ||| | || ||| |||||| |||||||| || | || ||| Sbjct 64338 TCTGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 64397 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| | | || | ||| || ||||||||||| |||| | | || | | || ||| Sbjct 64398 CAACAGCGTTTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTAC 64457 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || |||||||||||||| ||||| ||||||| Sbjct 64458 AATATCCAAAAAGAATCTACTTTGCATTTGGTGTT 64492 >seq10185 Length=35228 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| ||||| |||||| | ||||| ||||| |||||| | || || ||| Sbjct 2768 AAAATGCAAATCTTTGTAAAAACTCTTACCGGGAAAACTATTACCTTGGAGGTAGAACCT 2709 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| ||| | |||||| || ||| || |||||||| | || ||| Sbjct 2708 TCGGATACTATCGAGAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGAT 2649 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||| | | |||| ||| ||||| || |||| |||| | ||| | | || || Sbjct 2648 CAGCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGACGCACATTATCTGACTAT 2589 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || ||||| || || | || ||||| Sbjct 2588 AATATCCAGAAAGAGTCAACACTTCATCTGGTG 2556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412532494398962