Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq18001 87.8 3e-11 seq2691 87.8 3e-11 >seq18001 Length=6633 Score = 87.8 bits (96), Expect = 3e-11 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 1485462 GGCATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTC 1485521 |||| || | |||||| | || || ||||| || || ||||||||| |||| || || Sbjct 5918 GGCACCGGTATACTTGCTAACAGCTTTGGTGCCTTCACTAACGGCGTGCTTGGCGAGCTC 5859 Query 1485522 GCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTT 1485581 ||| ||| || | |||||||| ||||| ||||| || | | ||| || || Sbjct 5858 GCCCGGCAGTATTAAGCGCACGGATGTCTGTATCTCACGACTAGTAAGCGTAGCACGTTT 5799 Query 1485582 GTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 || | | |||| ||| |||||| | | | || |||| || ||| | ||||| Sbjct 5798 ATTGTAGTGTGCCAAGCGTGAGGCCTCCGAAGCAACACGTTCGAACAAGTCAATCACAAA 5739 Query 1485642 CGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAG 1485701 |||||| || ||| | || |||||||| | ||| ||||||||||||||| Sbjct 5738 GCTGTTCATAATATTCATTGCCTTAGAAGAGATGCCAATGTCACTGTGCACCTGCTTGAG 5679 Query 1485702 CACCTTGTAAA 1485712 |||||||||| Sbjct 5678 AACCTTGTAAA 5668 >seq2691 Length=19890 Score = 87.8 bits (96), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 431093 GATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACAT 431152 ||| ||||| ||||||||||| |||| || ||||||||||| || ||||| |||||||| Sbjct 7708 GATGGGCGGTCGCGAGGGTCTTATCGATACTGCCGTCAAGACAGCTGAGACTGGCTACAT 7649 Query 431153 CCAGCGTCGGTGCATCAAATCGATGGAG 431180 ||||| || |||||| |||||||| Sbjct 7648 ACAGCGCCGCCTTATCAAAGCGATGGAG 7621 Score = 87.8 bits (96), Expect = 3e-11 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 429048 AAGGGCGTCGTGGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGC 429107 ||| || || || ||| | || ||||| ||||| | |||||||||||| |||||| Sbjct 10644 AAGAGCCTCAAGGCGCGCCTGAAAGGCAAAGAGGGACAAATCCGCGGCAATCTGATGGGC 10585 Query 429108 AAGCGCGTCAACTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACA--TTG 429165 ||||| || ||||| |||| ||| | ||||| | |||||||| |||| ||| ||| Sbjct 10584 AAGCGTGTGGACTTTTCGGCACGCACTGTCATAACGCCCGACCCG--AATCTACAAATTG 10527 Query 429166 ACGAGGTGGGCGTGCC 429181 ||||||| || ||||| Sbjct 10526 ACGAGGTCGGTGTGCC 10511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909711385219526