Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq37138 190 2e-43 seq56942 156 4e-33 seq4449 109 5e-19 seq10185 107 2e-18 >seq37138 Length=11844 Score = 190 bits (210), Expect = 2e-43 Identities = 688/1059 (65%), Gaps = 42/1059 (4%) Strand=Plus/Plus Query 150403 TGTGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGA 150462 |||||| ||||| ||||| || ||||| ||||| |||||| |||| | || | || Sbjct 3601 TGTGCGCAAATAATACATTCCAGTTTTAAGGCCAGATTTCCAAGCGTAGAAATGAATTGA 3660 Query 150463 CGCCATTTTAGGCAAAGTAGGGTT-TGCCATGTACACGTTGAACGATTGACTTTGATCGA 150521 | | || || ||| ||||| ||| | || | ||| || || ||||||||||| | Sbjct 3661 TGTTAACTTTC-CATAGTTGGGTTCTGCAACGTGAATGTTAAAAGACTGACTTTGATCAA 3719 Query 150522 TAAATGCTCCCCTGTCTGCTGCCATTTCAATCATATATTTTCCATTGTTCTCCCAAATTT 150581 |||| ||||| || || |||||||||| ||| | |||| | || |||||| Sbjct 3720 TAAAAGCTCCTCTATCAGCTGCCATTTTAATTGTCGATTTAAC--TG-------AAATTT 3770 Query 150582 CCCAGATTGTCATGTACAGCTTTTTTAGATTG---TCGGGAATTTTGGCGATAGAAGCTA 150638 |||| | |||| |||| | | || || | ||||| | | ||| || Sbjct 3771 CCCAAACTGTCTTGTATAAGTCAC---GAATGGACTTAGGAATAGTTTCTATATTTTGTA 3827 Query 150639 TCGATCCTCTGTTTGCCATGATTGTTTTTCGCATACTAT--TTGTATAGAGATTTAATTT 150696 | || || | | ||| || ||| ||| ||| | | | ||| ||| || || Sbjct 3828 TAGAACCACGGCTTGATATAATTTGATTTTTCATGTTGTCATCCCATA---ATTCAAGTT 3884 Query 150697 -GATTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTC 150755 | ||||||| || | || | || |||||||| ||||| || || |||||||| | Sbjct 3885 CGGTTAGATCTCTGAGAAGGTGATGATTAACAACTTGGAATTCACCAGATAAAACACGCC 3944 Query 150756 TCAAAAACAAATTACTGTGAAACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGG 150815 | | | |||| | | |||||||| || || || || || ||||| || | Sbjct 3945 TGGTGTATATATTAGAAGTATAAGGTTCAAAGGATTCATTATTCCCAAGAATTTGAGCTG 4004 Query 150816 TCGTGGCCGTCGGCATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTATAT 150875 | | || || |||||| || ||||| || ||||| |||| || || ||||| || Sbjct 4005 TTGATGCTGTAGGCATGGGAGCAACAAGTAAAGAATTTCGTATGCCATACTTTTGAATTC 4064 Query 150876 T-TATTTTCAACTGTGACCAGTCCCATAACGAAGTCGG--TACCGTATTCCACAAATCGT 150932 | | ||| || | ||| ||||| || || || || | |||||||| |||| Sbjct 4065 TCTCCTTTAAAGCATT-CCAATCCCACAAGTTTGTTGGCGTAAC--ATTCCACATGTCGT 4121 Query 150933 ATTGCAATATTCCTTCGCTCGCTTTGCTACCGGCAAACGTGCTATAAGGCTCACTAACAG 150992 |||| ||||| |||| ||| | || || || | | |||||| | |||| Sbjct 4122 ATTGTAATATGCCTTTGCTTACAGGACTCCCTTCATATGATTCATAAGGACCG--AACAC 4179 Query 150993 AT--GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTT 151050 | || | ||| | || ||||| | || ||| || | |||||| |||||| | Sbjct 4180 TTCCGCTAATTCACAGCTTGCCTCTAATGCTCCATAGTAGATTGTTTCAAATATTTGTAT 4239 Query 151051 ATTCAATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGC 151110 ||| | | | || ||||| | || || |||| || | || |||||| || Sbjct 4240 ATTTAGCAAATATGCTTGCTCGCTTTCATATGGATAACGCATCAGTATAAGTGCATCTGC 4299 Query 151111 CAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTC 151170 ||||| |||| || || || ||||| ||||| | |||||||||||| || || ||| Sbjct 4300 AAAACCCTGAACTCCAATTCCTATGGGTCGATGCCTCATATTAGATTTCTTGGC---TTC 4356 Query 151171 A---ATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCACTACATGTTTGAC 151227 | | ||| || |||| ||| || |||||||||||| | || ||| ||| Sbjct 4357 AGGAAGAGGATAATAATTTATATCTATGATTTTATTCAAATTTTTTGTAACAGTTTTAGT 4416 Query 151228 CACAGTGTGCAATAGTTGAAAATCAAAAGTATCATTATT-GATAT--ATTTATTGACGGC 151284 || | | |||||||||| ||| | |||| || || | | || | || Sbjct 4417 TACTTCTTTAAGCTTTTGAAAATCATAAGACTTATTAGCAGAAATGAACATGTTAAGAGC 4476 Query 151285 AATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGC 151344 ||| || |||||||| || ||||| | || || ||||| |||||| || ||||| | Sbjct 4477 AATAGATGCTAGATTGCAAACGGCTATCTCATCTGGCGCTGAATATTCGACAATTTCAGT 4536 Query 151345 ACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGC 151404 |||||||||||||||||| || || ||| ||||||| ||||| | ||| |||| Sbjct 4537 ACACAAATTGCTGCATTTGATGGTACCAATATTTTTTTGATTACTTTTTCTGTTACAAGA 4596 Query 151405 GTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTG 151443 ||||| || ||||| |||||||| || ||||| |||| Sbjct 4597 ATCCTTATACAACATATACGGTGTTCCTGTTTCTACTTG 4635 >seq56942 Length=2534 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||||||| || |||| || ||||| |||||||||||||| ||| | Sbjct 280 CCGCCACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGAC 221 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||||| || | |||||||| ||||| ||||| ||||||||||||||||||| || || Sbjct 220 AATGTGCGTCCA-TCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGG 162 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||| || ||||| || |||||| ||| | | || | |||||| | ||||| || Sbjct 161 TATACCCTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAAC 102 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | || | |||||| || |||| ||||| || || |||||||| Sbjct 101 TTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 >seq4449 Length=67262 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || |||| |||||| || ||||| | |||||||||||||| || ||||| || Sbjct 64508 GCCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGA 64449 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| ||||| || ||||| |||||| | |||| ||| || ||||| ||||| Sbjct 64448 GAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGG 64389 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || |||||||| ||| || ||| | | ||| | || || | ||| || || Sbjct 64388 AATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAAC 64329 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | || ||||| || | || || ||||| || ||||| Sbjct 64328 CTCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCAT 64281 >seq10185 Length=35228 Score = 107 bits (118), Expect = 2e-18 Identities = 172/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || ||||| || | || | ||||| ||| || ||||| || || || || || Sbjct 2539 CCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGAT 2598 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||||| || | ||||| | ||| ||||||||| | |||| |||||||||||| || || Sbjct 2599 AATGTGCGTCCA-TCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGG 2657 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || |||||||| || |||||| ||||| | || | || || | |||||||| Sbjct 2658 AATACCTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTAC 2717 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTTT 137423 || | || | || || ||||| | |||||||| || ||||||| || |||||| Sbjct 2718 CTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCA----TTTTGTTTT 2773 Query 137424 ACCT 137427 ||| Sbjct 2774 TCCT 2777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488168834848800