Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq37138 251 2e-61 seq3199 86.0 1e-11 >seq37138 Length=11844 Score = 251 bits (278), Expect = 2e-61 Identities = 574/857 (67%), Gaps = 9/857 (1%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || ||||| || || |||||||||||| | ||||| ||| || || || | | | Sbjct 5391 TACTTTGGCTTTAAGACTCTTGAACGTTCATATTTGCTTAAAGTTAAAGGTAAAGTTGTG 5332 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || | || || |||||||| | | || ||||||| || ||||| | ||||| | Sbjct 5331 GAGAGACCACAGCACATGTTGATGAGAGTATCGATTGGAATACATGGTGAAGATATCGAT 5272 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 |||| |||||| || || | | | | || | || ||||| |||| || Sbjct 5271 GCTGCAATTGAAACATACAATTTGCTCTCTGAGAAATATTTTACCCATGCCTCTCCAACT 5212 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 ||||| || | ||| | | || || | ||||| ||| | || ||| Sbjct 5211 TTATTTGCGGCTGCAACAAGACGCCCTCAGTTATCATCTTGTTTTTTGCTTACAATGGTA 5152 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603 | ||||| |||||||| |||| | | | || || | ||| | ||||||||| Sbjct 5151 GCAGATTCAATTGAAGGAATTTTTAAATCAGTTGAACAGTGTGCAATGATTTCTAAATCA 5092 Query 110604 TCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCA--AATATCGCAA 110661 | ||||||||||| || | |||||| |||||| | |||||| || ||||| || Sbjct 5091 GCGGGAGGAATTGGAATAAATGTTCATTGTATTCGAGCTAAAGGAACATCAATAT-GCGG 5033 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 || | || || | || | ||| | || || |||||||| || ||||| | ||| Sbjct 5032 CA-CTAATGGCACATCTAATGGCTTAGTGCCTATGTTAAGGGTGTTCAATAATGTAGCAC 4974 Query 110722 AATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTT 110778 ||||| | || ||||| || || ||| | |||||||| || | || |||| Sbjct 4973 GTTATGTAGACCAGGGTGGCGGAAAAAGGCCTGGTGCGTTTGCTATATACTTAGAGCCTT 4914 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 ||||||| ||||| || || || ||||| | |||||| |||| || ||||| | Sbjct 4913 GGCATTCGGATATTTTCGAGTTTTTAGACTTAAAAAAAAATACAGGAAAAGAGGAACACA 4854 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 ||||| | || |||||||| || | |||||| | ||| | ||||||| ||| || || Sbjct 4853 GAGCAAGAGACTTATTTTACGCCCTCTGGATTCCTGATCTGTTCATGAGACGCGTAGAAT 4794 Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATG 110958 ||||| ||||| ||||||||||| || | ||| || || ||| || | | Sbjct 4793 CTGATGGCGACTGGTCACTTATGTGTCCCCACAAATGTCCAGGGCTTGATGAAGTTTGGG 4734 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC-GCAAACAA 111017 || |||| |||||||| | || ||||||||||||||||||||| ||||| | || Sbjct 4733 GAGAAGAATTTGAAGAGTTATATGAAAAATATGAAAAAGAAGGC-CGTTTCAATAGGAAA 4675 Query 111018 ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCT 111077 ||| |||||| ||||||||| ||| ||||| | ||||| ||||| ||||| || Sbjct 4674 ATTAAAGCTCAGTCACTTTGGTTTGCTATCATTGAAGCCCAAGTAGAAACAGGAACACCG 4615 Query 111078 TATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATT 111137 ||||| |||||||| ||| | ||| | ||| |||||||| ||| | || || || Sbjct 4614 TATATGTTGTATAAGGATTCTTGTAACAGAAAAAGTAATCAAAAAAATATTGGTACCATC 4555 Query 111138 AAGTCTAGTAATTTGTG 111154 || | || |||||||| Sbjct 4554 AAATGCAGCAATTTGTG 4538 >seq3199 Length=21050 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/172 (72%), Gaps = 6/172 (3%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| |||| | |||||| | || || | ||||| || ||| |||||||| ||| Sbjct 11823 GATTTGGTTATTTTCAATCGTCAGCCTACGCTGCACAAGATGAGTATGATGGGGCATCGT 11882 Query 305384 GTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTA---CGCCTTAT 305440 ||||||||||| | | | ||||||||| | ||| | || | |||| ||||||| Sbjct 11883 GTCAAAGTATTGCCCTGGTCGACATTTCGTATGAATCT--GT-CGTGTACTTCGCCTTAC 11939 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGG 305492 ||||| ||||| || || || |||||||| |||| || || || |||| || Sbjct 11940 AATGCCGATTTCGACGGCGACGAAATGAACTTGCACGTGCCACAGTCAATGG 11991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185878632200074