Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq56942 134 9e-27 seq10185 116 2e-21 seq4449 113 3e-20 >seq56942 Length=2534 Score = 134 bits (148), Expect = 9e-27 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33520 TCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCG 33579 ||||| || | || ||| || ||||| || || || || |||||||||||||| ||| Sbjct 283 TCACCGCCACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCG 224 Query 33580 GAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGC 33639 || | ||||||| | || || | ||||| || || || |||| ||| ||||||||| || Sbjct 223 GACAATGTGCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGC 164 Query 33640 GGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTC 33698 || | ||| ||||| || ||||||| | || |||| || | ||||| || ||| Sbjct 163 GGTATACCCTCTTTATCTTGAATTTTC-GCTTTGACATTCTCAATCGTGTCCGATGGTTC 105 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||| ||||| ||||| || | |||||| |||||||| ||||| Sbjct 104 AACTTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 >seq10185 Length=35228 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| ||| || || |||||| || || || || || || Sbjct 2539 CCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGAT 2598 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||||| | || |||||||| || || |||||||||||||| ||||||||| | || Sbjct 2599 AATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 2658 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||| || |||||| | || |||| || | || || | ||| || Sbjct 2659 ATACCTTCTTTATCTTGAATTTT-AGCTTTTACATTCTCGATAGTATCCGAAGGTTCTAC 2717 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || || | |||||||||||||| ||||| Sbjct 2718 CTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCAT 2765 >seq4449 Length=67262 Score = 113 bits (124), Expect = 3e-20 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| ||||||||||| | ||| |||||||| || ||||| || ||| Sbjct 64507 CCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAG 64448 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| || ||||| ||||||||||| |||||| | || Sbjct 64447 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGA 64388 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| ||| || | || |||| || | || || | || || Sbjct 64387 ATTCCCTCTTTGTCCTGAATCTT-GGCTTTGACATTTTCGATAGTATCAGAGGGCTCAAC 64329 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 |||| ||||| ||||| || |||| || || || ||||||||||| |||| Sbjct 64328 CTCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCAT-GTTG 64277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328457890481280