Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq37138 176 4e-39 seq56942 125 7e-24 seq4449 111 1e-19 seq10185 89.7 5e-13 >seq37138 Length=11844 Score = 176 bits (194), Expect = 4e-39 Identities = 823/1292 (64%), Gaps = 41/1292 (3%) Strand=Plus/Plus Query 146549 CAACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTT 146608 ||||||| || ||| || | || || ||||||||||||||||||||||| || |||| Sbjct 3567 CAACAGTAAACTGTATTGCATTAGCGGCTGGTTTTGTGCGCAAATAATACATTCCAGTTT 3626 Query 146609 TGAGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCG 146668 | |||||| || ||| | || ||||| || || | | | || | || || | Sbjct 3627 TAAGGCCAGATTTCCAAGCGTAGAAATGAATTGATGTTAACTTTCCATAGTTGGGTTCTG 3686 Query 146669 CCACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCT 146728 | ||| || ||||| || || |||||||| || ||||| | || || ||||| | Sbjct 3687 CAACGTGAATGTTAAAAGACTGACTTTGATCAATAAAAGCTCCTCTATCAGCTGCCATTT 3746 Query 146729 CAATCATGCGTTTTGTCTTCA-TTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCT 146787 ||| | || ||| || | |||||||| | || ||||| | | || | | Sbjct 3747 TAATTGT-CGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCACGAATGGACTTA 3805 Query 146788 GGAATACCTTCAATGTTTTGAATAGAGCC----CTTGTGCGCAAAAATAG-TGTTTCGTA 146842 |||||| ||| || ||||| ||||| || |||| | || | | | |||| | Sbjct 3806 GGAATAGTTTCTATATTTTGTATAGAACCACGGCTTGAT---ATAATTTGATTTTTCATG 3862 Query 146843 TTTCGGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTT 146902 || | ||| | |||| | || || | | | ||||| || |||| Sbjct 3863 TTGTCATCCCATAAT--TCAAGTTCGGTTAGATCTCTGAGAAGGTGATGATTAACAACTT 3920 Query 146903 GAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACT 146962 | || || || | | ||||| ||| || | ||| ||| |||| ||||| || | Sbjct 3921 GGAATTCACCAGATAAAACACGCCTGGTGTATATATTAGAAGTATAAGGTTCAAAGGATT 3980 Query 146963 CATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAAT 147022 ||||||| || | ||||| || || | ||| ||||||||| || || | || |||| Sbjct 3981 CATTATTCCCAAGAATTTGAGCTGTTGATGCTGTAGGCATGGGAGCAACAAGTAAAGAAT 4040 Query 147023 TTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGG 147082 |||| | || ||| | || | ||||| |||| | ||| ||||||| | | Sbjct 4041 TTCGTATGCCATACTTTTGAATTCTCTCCTTTAAAGCATTCCAATCCCACAAGTTTGTTG 4100 Query 147083 GCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACG 147142 |||| || |||||||||||||| || | | ||| || | ||||| || | | | Sbjct 4101 GCGTAACATTCCACATGTCGTATTGTAATATGCCTTTGCTTACAGGACTCCCTTCATATG 4160 Query 147143 TAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATA 147202 || ||| | ||| ||||||||||||||||| | ||||||||||| | Sbjct 4161 ATTCATAAGGACCGAACACTTCCGCTAATTCACAGCTTGCCTCTAATGCTCCATAGTAGA 4220 Query 147203 TGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCA 147262 | ||||| |||||| | ||||| | |||| ||||| || || || ||||| Sbjct 4221 TTGTTTCAAATATTTGTATATTTAGCAAATATGCTTGCTCGCTTTCATATGGATAACGCA 4280 Query 147263 GAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGC----TTT 147318 || | || ||||| || |||||||| | || | || || ||||||||| | | Sbjct 4281 TCAGTATAAGTGCATCTGCAAAACCCTGAACTCCAATTCCTATGGGTCGATGCCTCATAT 4340 Query 147319 TCG-TTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAG 147377 | | || || ||||| | | ||||| | || ||| || || || || | Sbjct 4341 TAGATTTCTTGGCTTC-----AGGAAGAGGATAATAATTTATATCTATGATTTTATTCAA 4395 Query 147378 GTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTC 147437 || ||| |||||||| | ||| || || | |||||||||| | | || Sbjct 4396 ATTTTTTGTAACAGTTTTAGTTACTTCTTTAAGCTTTTGAAAATCATAAG--ACTTATTA 4453 Query 147438 GACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGC 147497 | || | | | ||| | || ||||| || |||||||| ||||| |||| || Sbjct 4454 G-CAGAAATGAACATGTTAAGAGCAATAGATGCTAGATTGCAAACGGCTATCTCATC--T 4510 Query 147498 GTCGCTG--TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTT 147555 | ||||| || | || ||||| | |||| ||||||||||| ||| || | |||| Sbjct 4511 GGCGCTGAATATTCGACAATTTCAGTACACAAATTGCTGCATTTGATGGTACCAATATTT 4570 Query 147556 TGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 147615 | ||||| ||||| | || || | || || | | ||| |||||| || || || Sbjct 4571 TTTTGATTACTTTTTCTGTTACAAGAATCCTTATACAACATATACGGTGTTCCTGTTTCT 4630 Query 147616 ACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGAT-- 147670 ||||| | ||||| ||| ||||| | || ||| ||| | | || || Sbjct 4631 ACTTGGGCTTCAATGATAGCAAACCAA---AGTGACTGAGCTTTAA---TTTTCCTATTG 4684 Query 147671 -AGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCG 147729 | ||||| || ||||| || || || ||| ||||| || || || | || Sbjct 4685 AAACGGCCTTCTTTTTCATATTTTTCATATAACTCTTCAAATTCTTCTCCCCAAACTTCA 4744 Query 147730 GCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGT 147789 |||| || ||||| | || |||||||| || ||||| | | || | | |||||| Sbjct 4745 TCAAGCCCTGGACATTTGTGGGGACACATAAGTGACCAGTCGCCATCAGATTCTACGCGT 4804 Query 147790 CGCATAAACAGATCCGGCACCCACAGCGCGTA 147821 | ||| |||||||| || | ||| || ||||| Sbjct 4805 CTCATGAACAGATCAGGAATCCAGAGGGCGTA 4836 >seq56942 Length=2534 Score = 125 bits (138), Expect = 7e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||||||||| || | | || || ||||| |||||||||||| || || Sbjct 275 ACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGACAATGT 216 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||||||||||||| || | |||| ||||| || |||||||| ||||| || Sbjct 215 GCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGTATACC 156 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||||| |||||| ||| | | || | || || | || || ||||| | Sbjct 155 CTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAACTTCCAG 96 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| ||||||||||| ||||| | || || ||||| Sbjct 95 CGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 >seq4449 Length=67262 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | || |||||||| || |||||||| | ||| || | Sbjct 64495 CGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGGGTGCGGCCA 64436 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| || | | | || | |||||||||||||||||| || || ||||| Sbjct 64435 TCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTG 64376 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||| | | ||| | |||||| | ||||| || || | || | Sbjct 64375 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATG 64316 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || || || || || | ||| ||||||||| Sbjct 64315 GTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCATG 64280 >seq10185 Length=35228 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGG 131960 ||| ||||| | |||| ||| | |||||||||| || || || ||||| | | ||| Sbjct 2544 ACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGATAATG- 2602 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 | || |||||| | || ||||| | | | || | ||| || |||||||| || || | Sbjct 2603 TGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATAC 2662 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 |||||||||| |||||| ||| | | || | |||||| | || || || || | Sbjct 2663 CTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTACCTCCA 2722 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || |||||||||| || || ||||| Sbjct 2723 AGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCAT 2765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476245198344240