Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq56942 140 3e-28 seq4449 136 3e-27 seq10185 91.5 1e-13 >seq56942 Length=2534 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| ||||| ||||| || | ||| || || ||||| || ||||||||| | Sbjct 280 CCGCCACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGAC 221 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | |||||||||||||| || ||| | || ||||| || ||||| ||||| Sbjct 220 AATGTGCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGT 161 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||||||| || || ||| | | || | ||||| | | ||||||| Sbjct 160 ATACCCTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAACT 101 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || ||||| |||||||||||||||||||| Sbjct 100 TCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 >seq4449 Length=67262 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || || | ||||| |||||||| || ||||| |||||||| ||||||||||| Sbjct 64508 GCCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGA 64449 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| | ||||| |||||||| || || | || | |||||||||||| || || Sbjct 64448 GAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGG 64389 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || |||||| ||| | |||| | ||| || | || ||||| Sbjct 64388 AATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAAC 64329 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||||||||| || || || || ||||| ||||| Sbjct 64328 CTCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCAT 64281 >seq10185 Length=35228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 27013 AATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGT 27072 ||| ||| || || || || || | |||| ||| | || || ||||| || ||||| | Sbjct 2532 AATAATT-CCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTAT 2590 Query 27073 AGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 |||| | | |||| ||| | ||||| | || ||||| || |||| | ||| || ||| Sbjct 2591 AGTCAGATAATGT-GCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGA 2649 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 || || || | ||| |||||||| || || ||| | | || | ||| || | Sbjct 2650 TCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAA 2709 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || | || |||| ||| || || |||||||| |||||||||||||| Sbjct 2710 GGTTCTACCTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCAT 2765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424616240194608