Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq37138 123 3e-23 seq28107 89.7 6e-13 seq10562 89.7 6e-13 >seq37138 Length=11844 Score = 123 bits (136), Expect = 3e-23 Identities = 435/674 (65%), Gaps = 9/674 (1%) Strand=Plus/Minus Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 || || || ||||| || ||| | || || || | |||||| ||| ||||||||||| Sbjct 4629 GAAACAGGAACACCGTATATGTTGTATAAGGATTCTTGTAACAGAAAAAGTAATCAAAAA 4570 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA 105034 ||| | ||| ||||| | |||| | ||||| ||||| | |||| | ||| | Sbjct 4569 AATATTGGTACCATCAAATGCAGCAATTTGTGTACTGAAATTGTCGAATATTCAGCGCCA 4510 Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 105094 ||||||| || || || || || ||||| || ||||| || || | | | | Sbjct 4509 GATGAGATAGCCGTTTGCAATCTAGCATCTATTGCTCTTAACATGT---TCATTTCTGCT 4453 Query 105095 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTA 105154 | ||| | | ||||| | |||| || | ||||| || |||||||| || ||||| | Sbjct 4452 AATAAGTCTTATGATTTTCAAAAGCTTAAAGAAGTAACTAAAACTGTTACAAAAAATTTG 4393 Query 105155 AACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGA 105214 || | | | || |||| ||||| ||| || || || |||||||||||||| Sbjct 4392 AATAAAATCATAGATATAAATTATTATCCTCTTCCTGAAGCCAAGAAATCTAATATGAGG 4333 Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 105274 || || || || || | || ||||||||| | || |||| | | || || || | Sbjct 4332 CATCGACCCATAGGAATTGGAGTTCAGGGTTTTGCAGATGCACTTATACTGATGCGTTAT 4273 Query 105275 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCAC 105334 ||| ||| ||| |||| | | ||| | |||||||| || || || | Sbjct 4272 CCATATGAAAGCGAGCAAGCATATTTGCTAAATATACAAATATTTGAAACAATCTACTAT 4213 Query 105335 GCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 105394 | || | ||||| || | || || || || || ||||| |||||| | | ||| Sbjct 4212 GGAGCATTAGAGGCAAGCTGTGAATTAGCGGAAGTGTTCGGTCCTTATGAATCATATGAA 4153 Query 105395 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGT--GAGACCAAGC 105452 || ||| | |||| | | |||| || |||||| | | | | | ||| | Sbjct 4152 GGGAGTCCTGTAAGCAAAGGCATATTACAATACGACATGTGGAATGTTACGCCAACAAAC 4093 Query 105453 TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 105512 || | || ||| | ||| | ||||| | || | || | || | || || | Sbjct 4092 TT--GTGGGATTGGAATGCTTTAAAGGAGAGAATTCAAAAGTATGGCATACGAAATTCTT 4035 Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGC 105571 | || | ||||| ||||| ||||| || || || |||| ||||||| |||||||||| | Sbjct 4034 TACTTGTTGCTCCCATGCCTACAGCATCAACAGCTCAAATTCTTGGG-AATAATGAATCC 3976 Query 105572 TTTGAACCCTACAC 105585 |||||||| || || Sbjct 3975 TTTGAACCTTATAC 3962 >seq28107 Length=66327 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 9757 ||||| |||||||||||||||||||| | |||||||| || || ||| || | | || Sbjct 22697 CCCACCGCATCAATCTCATCAATGAAAAGAATGCATGGCGCATGTTTGCGTGCCATTGCA 22638 Query 9758 AAGAGATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGG 9815 || | ||| || ||||| || || || || || |||||||| |||| ||| | || | Sbjct 22637 AACATATCACGGACACG--TGACGGTCCAACGCCCACAAACATTTCCAAAAACTCTGAGC 22580 Query 9816 CGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 | || || | ||||| || ||||| | ||| ||||| | ||| ||||| | || Sbjct 22579 CAGACACGGT-AATGAACGGTACATTTGCTTCTCCCGCTGTCGCTTTAGCGAGTAACGTT 22521 Query 9875 TTACCCGTACCTGG 9888 || || || ||||| Sbjct 22520 TTGCCAGTGCCTGG 22507 >seq10562 Length=15860 Score = 89.7 bits (98), Expect = 6e-13 Identities = 216/320 (68%), Gaps = 8/320 (3%) Strand=Plus/Plus Query 168382 TGGATCATCTCTCGGATCAAAGATCTTTCGGGCATCTTTTGTGAGCT--TTGTAAAGATA 168439 ||||||||| |||| ||||||| || | || | |||| | |||| |||||| Sbjct 438 TGGATCATCAGAAGGATGAAAGATCAACCGTG--TCAGTGGTGACATAATTGTGAAGATA 495 Query 168440 TACCTCGTTTGAGACGCA-TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGG 168498 || | || || |||| ||||| ||||| | ||| |||||||||||||| | ||| Sbjct 496 TAACGCGCGCTAG-CGCAATCCTTTCCACCGGCTAAACGTGTACCAAACTGACCGCGCGG 554 Query 168499 CTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GT 168557 ||||| | ||| ||||| || || || | |||| | |||||| |||||||| || | Sbjct 555 TTCAAGCAAATTTATATTATTGGAGCCAACATAGTTTTGCGCCAAATTGACAATAGTCGA 614 Query 168558 CCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACT 168617 | || || || | |||||| || || || || | | || || || | | | | || Sbjct 615 CTGC-AGCGACATTTCACCATGATGATAGGCGGACATTTCCGCAACCGAACCGGAGAGCT 673 Query 168618 GCGCCACTTTCATCTCATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTT 168677 | |||||||| | |||| ||| || | |||||| | |||| ||||| |||| Sbjct 674 GTGCCACTTTAACCTCACGTTTGTCGTTACGCTTGAAGCACGTAAACATTACCTTACGTT 733 Query 168678 GCGAAGGCTTGAGACCATCC 168697 | ||| || | ||| ||| Sbjct 734 GGCCAGGTTTAAAACCGTCC 753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582812899450160