Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4449 185 1e-41 seq10185 156 5e-33 seq56942 145 9e-30 seq4760 109 6e-19 seq2705 89.7 6e-13 seq32606 82.4 9e-11 >seq4449 Length=67262 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || ||||| || || ||||||||||||||| | | Sbjct 64281 ATGCAGATCTTCGTTAAGACCCTAACGGGCAAAACCATCACTCTTGAGGTTGAGCCCTCT 64340 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || || || ||||||||||| ||||||||||||||||| || Sbjct 64341 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCAA 64400 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| || || || || |||| || ||||| | ||||| ||| Sbjct 64401 CAGCGTTTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAT 64460 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| ||| | ||| | || |||||||| || ||||| Sbjct 64461 ATCCAAAAAGAATCTACTTTGCATTTGGTGTTGCGTCTACGTGGTGG 64507 >seq10185 Length=35228 Score = 156 bits (172), Expect = 5e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || |||||||| || |||||||| | ||||| || | Sbjct 2766 AATGCAAATCTTTGTAAAAACTCTTACCGGGAAAACTATTACCTTGGAGGTAGAACCTTC 2707 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| | || ||||||||||| || || || || ||||| ||||| || Sbjct 2706 GGATACTATCGAGAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCA 2647 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| | |||||||||||||||||| | || |||| || || || | |||||||| Sbjct 2646 GCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGACGCACATTATCTGACTATAA 2587 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||| || || || || |||||||| || | || | || |||||| Sbjct 2586 TATCCAGAAAGAGTCAACACTTCATCTGGTGCTCCGCTTACGTGGTGGA 2538 >seq56942 Length=2534 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || ||||| || || ||||| ||||| || || ||||| || Sbjct 53 AATGCAAATCTTTGTGAAAACGCTGACTGGTAAGACGATTACGCTGGAAGTTGAACCATC 112 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | || || |||||||| || || ||||| || || ||||| || Sbjct 113 GGACACGATTGAGAATGTCAAAGCGAAAATTCAAGATAAAGAGGGTATACCGCCAGATCA 172 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || || ||||| || || ||||| |||| || || | | ||||| || Sbjct 173 GCAACGTCTGATCTTCGCTGGCAAACAGCTCGAAGATGGACGCACATTGTCCGACTACAA 232 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || ||||| | || |||||||| || || || Sbjct 233 CATACAAAAGGAATCGACGCTTCACTTGGTTTTGCGTCTGCGTGGCGG 280 >seq4760 Length=7449 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || |||| || || || |||| | ||| | || | Sbjct 1854 AATGCAAATCTTTGTAAAAACTCTTAACGAGAAAACCATTAACTTGGAGCTAGAACCTTC 1913 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| | | |||| | || ||||||||| | || || || || ||||| ||||| || Sbjct 1914 AGATACTACCGAAAATATAAAAGCTAAAATTTAAGATAAAGAAGGTATTCCACCAGAGCA 1973 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | |||||||||||||||||| | || ||| || | |||| ||||| || Sbjct 1974 ACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAAATGGACGCATATTAGCGGACTACAA 2033 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || | || || || || |||||||| || Sbjct 2034 TATCTAGAAAGATTCAACACTTCATCTGGT 2063 >seq2705 Length=26899 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || ||| |||| || || ||||| | | ||| || | Sbjct 26181 AATGCAAATCTTTGTAAAAACTCTTCCCGGGAAAACCATTACCTTGGGGGTAGAACCTTC 26122 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | || ||||||| || || || | || ||||| || | || Sbjct 26121 CGACACTATCGAGAATGTAAAATCTAAAATCCAAGATAAACATGGTATTCCACCCGTTCA 26062 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| |||||| ||||||| ||||| | || ||| | || || | |||| ||| Sbjct 26061 GCAACGTTTAATTTCTGCTGGTTAGCAATTGGAAAATGGACACACATTAACTGACTCTAA 26002 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||| | || || || ||||| || || | || | || |||||| Sbjct 26001 TATCCAGAGAGAGTCAACACTTCAACTGGTGCTCCGCTTGCGTGGTGGA 25953 >seq32606 Length=18579 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| |||| || || || || ||||| || || ||||| ||| | ||||||||||||||| Sbjct 7113 AAAGTTCAAGATAAAGAAGGTATTCCACCGGAGCAGCAACGTTTGATTTTTGCTGGTAAG 7172 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||| | || |||| | || || | |||| |||| |||| || | || || |||||| Sbjct 7173 CAATTGGAAGATGGACACACATTATCTGACTTTAATATCCAGAAAGCGTCAACACTTCAT 7232 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | | | || | ||||| Sbjct 7233 CTGGTGCTCCATTTTTGTGGTGG 7255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569872444386080