Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq56942 107 1e-18 seq4449 105 4e-18 >seq56942 Length=2534 Score = 107 bits (118), Expect = 1e-18 Identities = 168/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 34477 TCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT 34536 || ||||| | |||||||| ||||| || || || |||||||| ||||| || || Sbjct 283 TCACCGCCACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCG 224 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 || | ||| || | ||||| || ||||| || || || || | ||| || || || ||| Sbjct 223 GACAATGTGCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGC 164 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTC-- 34653 || | ||||| || ||| ||| ||| | ||| || | ||| ||||| || | Sbjct 163 GGTATACCCTCTTTATCT-TGAATTTTCGCTTTGACATTCTCAATCGTGTC--CGATGGT 107 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || ||||||| || ||||| ||||| || | |||||||||||| || ||||| || Sbjct 106 TCAACTTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCATTTT 51 >seq4449 Length=67262 Score = 105 bits (116), Expect = 4e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||||||||||||||||| | ||| || ||||| || || || || | Sbjct 64509 CGCCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAG 64450 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || | ||||| || ||||| || |||||||| ||||||||||| || || | Sbjct 64449 AGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAG 64390 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCA 34657 | | |||||| ||||| ||||| ||| | | || || || | ||| | Sbjct 64389 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAA 64330 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 | || | || || ||||| || |||| || || || || |||||||||||| || Sbjct 64329 CCTCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCATGTTGTTT 64274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314493953490122