Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq32255 176 4e-39 seq56942 170 2e-37 seq4449 143 2e-29 seq10185 127 2e-24 seq2705 96.9 3e-15 >seq32255 Length=22131 Score = 176 bits (194), Expect = 4e-39 Identities = 211/287 (74%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 135473 TTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGC 135532 || ||||| | |||||| |||| | ||| || |||||||||||||| ||| ||||| Sbjct 3515 TTATGGAATTCCGCACAATTGCAGTTGGTGCGCGAGGGCAAAATGCACGGGTTTTTGCGC 3574 Query 135533 ATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACAC 135592 ||||||||||| || ||||| | |||||| | | |||||| | | |||| || | || Sbjct 3575 ATGTATTGGGCGAAGAAGATTCTCGAATGGACAGAATCGCCGGAACAGGCACTGGAGTAC 3634 Query 135593 GCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 || || || || ||||| | || || ||||||||||||||| ||| |||||| || || Sbjct 3635 GCCATTTTGTTGAATGACAAATATAGCTTAGATGGACGCGATCCAAGTGGCTATGTTGGC 3694 Query 135653 TGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGC 135712 ||||||||||| ||| |||| || || || || || ||| ||||| | || || Sbjct 3695 TGTATGTGGTCCATTGGCGGAGTGCATGACCAGGGCTGGGCTGAGCGTGCCATCTTCGGT 3754 Query 135713 AAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 ||||| || | ||||| ||| | || |||| | |||||| |||| Sbjct 3755 AAGATACGTTTCATGAATTATCAGGGATGTAAGCGCAAATTTGATGT 3801 >seq56942 Length=2534 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| ||||| || ||| | ||||| || ||||| ||||| || Sbjct 54 ATGCAAATCTTTGTGAAAACGCTGACTGGTAAGACGATTACGCTGGAAGTTGAACCATCG 113 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| |||||| ||||||||||| ||||| || ||||| || ||||| Sbjct 114 GACACGATTGAGAATGTCAAAGCGAAAATTCAAGATAAAGAGGGTATACCGCCAGATCAG 173 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| |||||||| | ||||| | || | ||||| |||||| Sbjct 174 CAACGTCTGATCTTCGCTGGCAAACAGCTCGAAGATGGACGCACATTGTCCGACTACAAC 233 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| ||||| | || |||||||||||| |||| || || Sbjct 234 ATACAAAAGGAATCGACGCTTCACTTGGTTTTGCGTCTGCGTGGCGG 280 >seq4449 Length=67262 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || ||||| | || |||||||| || || || || Sbjct 64280 CATGCAGATCTTCGTTAAGACCCTAACGGGCAAAACCATCACTCTTGAGGTTGAGCCCTC 64339 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | |||||| || ||||| |||||||| || || || || ||||| Sbjct 64340 TGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCA 64399 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| |||| || |||||||| ||||||| | ||| | || || ||||| Sbjct 64400 ACAGCGTTTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 64459 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||| || || || || |||||||| |||||| | || |||||| Sbjct 64460 TATCCAAAAAGAATCTACTTTGCATTTGGTGTTGCGTCTACGTGGTGGC 64508 >seq10185 Length=35228 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||||||||| ||||| || ||||||| | || || ||||| || Sbjct 2765 ATGCAAATCTTTGTAAAAACTCTTACCGGGAAAACTATTACCTTGGAGGTAGAACCTTCG 2706 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||||||||||| |||||||| || ||||| ||||| Sbjct 2705 GATACTATCGAGAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAG 2646 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || || ||||||||||| | || | || || || || Sbjct 2645 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGACGCACATTATCTGACTATAAT 2586 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | ||| |||| | || || || ||||| || Sbjct 2585 ATCCAGAAAGAGTCAACACTTCATCTGGTGCTCCGCTTACGTGGTGGAAT 2536 >seq2705 Length=26899 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||||||||| |||| || | ||||| | | || ||||| ||| Sbjct 26180 ATGCAAATCTTTGTAAAAACTCTTCCCGGGAAAACCATTACCTTGGGGGTAGAACCTTCC 26121 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||| ||||| ||| | || || ||||||| ||| Sbjct 26120 GACACTATCGAGAATGTAAAATCTAAAATCCAAGATAAACATGGTATTCCACCCGTTCAG 26061 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAA 27140 || |||||||| | || || | ||||||||| Sbjct 26060 CAACGTTTAATTTCTGCTGGTTAGCAATTGGAA 26028 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||||||||| |||| || | ||||| | | || ||||| ||| Sbjct 26666 ATGCAAATCTTTGTAAAAACTCTTCCCGGGAAAACCATTACCTTGGGGGTAGAACCTTCC 26607 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||| ||||| ||| | || || ||||||| ||| Sbjct 26606 GACACTATCGAGAATGTAAAATCTAAAATCCAAGATAAACATGGTATTCCACCCGTTCAG 26547 Query 27108 CAGCGTTTAAT 27118 || |||||||| Sbjct 26546 CAACGTTTAAT 26536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434584415287680