Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_028954.1 Length=36065 Score E Sequences producing significant alignments: (Bits) Value seq31593 95.1 3e-15 seq30867 93.3 1e-14 seq18060 91.5 3e-14 seq40140 84.2 5e-12 >seq31593 Length=1526 Score = 95.1 bits (104), Expect = 3e-15 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 26799 CAAGCCCGATCTGCCAGCGCGGTTGCTGTCCGCAATGCTTGCGGCCGAGTTCGTAAAGCC 26858 |||| ||||||||||| ||||| | ||||||||||||||| ||| || |||| | Sbjct 882 CAAGGCCGATCTGCCACTTAGGTTGATTGCCGCAATGCTTGCGGGCGATCTCATAAATGC 823 Query 26859 GCTTTTCCAGCGGGCGGCGCAGGCGGAAATAATCGGGGTGA-AGCGTCAGGATCGCGTTG 26917 || ||| ||||| ||||||||||||||||| ||| ||| | ||| | || |||| Sbjct 822 GCCGTTCGAGCGGACGGCGCAGGCGGAAATAGTCGTT-TGAGATCGTGACGACTTCGTTT 764 Query 26918 GCTTCAATCGCCTG 26931 | |||||||||||| Sbjct 763 GATTCAATCGCCTG 750 >seq30867 Length=3567 Score = 93.3 bits (102), Expect = 1e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 26799 CAAGCCCGATCTGCCAGCGCGGTTGCTGTCCGCAATGCTTGCGGCCGAGTTCGTAAAGCC 26858 |||||||||| ||||| | ||| | ||||| ||||| || | | ||||| |||| Sbjct 984 CAAGCCCGATGTGCCATTTCTTTTGGTTGCCGCAGTGCTTCCGTGCAATCTCGTACAGCC 925 Query 26859 GCTTTTCCAGCGGGCGGCGCAGGCGGAAATAATCGGG-GTGAAGCGTCAGGATCGCGTTG 26917 || || |||||||||||||||||||| || ||||| | || | |||| || | || | Sbjct 924 GCCGCTCAAGCGGGCGGCGCAGGCGGAAGTAGTCGGGCGAGATG-GTCACGACCTCGGAG 866 Query 26918 GCTTCAATCGCCTGAAATATCCAGTCCGGCAGG 26950 | |||||||||| | | | |||||||| |||| Sbjct 865 GATTCAATCGCCCGCATGAACCAGTCCGACAGG 833 >seq18060 Length=3582 Score = 91.5 bits (100), Expect = 3e-14 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 26798 GCAAGCCCGATCTGCCAGCGCGGTTGCTGTCCGCAATGCTTGCGGCCGAGTTCGTAAAGC 26857 || || ||||| ||||| ||| || |||||| ||||||||||||| || || || Sbjct 3295 GCGAGGCCGATGTGCCATTTCGGCTGGCCTCCGCAGTGCTTGCGGCCGATCTCATACAGG 3354 Query 26858 CGCTTTTCCAGCGGGCGGCGCAGGCGGAAATAATCGGGGTGAAGCGTCAGGATCGCGTTG 26917 || ||||||||||||||||||||||||||| ||| | ||||| || | ||| | Sbjct 3355 CGGCGTTCCAGCGGGCGGCGCAGGCGGAAATAGTCGTTCGAGATCGTCACGACCTCGTCG 3414 Query 26918 GCTTCAATCGCCTGAAATATCCAGTCCGGCAGG 26950 | |||||||| | | | |||||| | |||| Sbjct 3415 CCCTCAATCGCGCGCATCACCCAGTCAGACAGG 3447 >seq40140 Length=4150 Score = 84.2 bits (92), Expect = 5e-12 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 26789 TGAAGGGCGGCAAGCCCGATCTGCCAGCGCGGTTGCTGTCCGCAATGCTTGCGGCCGAGT 26848 ||||| ||| || ||||| ||||| ||| || ||||| ||||||||||||| | Sbjct 4048 TGAAGCTTGGCGAGGCCGATGTGCCATTTCGGCTGACCCCCGCAGTGCTTGCGGCCGATT 4107 Query 26849 TCGTAAAGCCGCTTTTCCAGCGGGCGGCGCAGGCGGAAATA 26889 || || || || ||||||||||||||||||||||||||| Sbjct 4108 TCATACAGGCGACGTTCCAGCGGGCGGCGCAGGCGGAAATA 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115202295256716