Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq56942 116 3e-21 seq10185 114 9e-21 seq4449 87.8 1e-12 >seq56942 Length=2534 Score = 116 bits (128), Expect = 3e-21 Identities = 169/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| ||||||||||| || ||||| || ||||| | || || ||| | Sbjct 51 AAAATGCAAATCTTTGTGAAAACGCTGACTGGTAAGACGATTACGCTGGAAGTTGAAC-C 109 Query 27847 ACCG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | || ||||| | ||| |||||| ||||| || ||||| ||| | ||| Sbjct 110 ATCGGACACGATTGAGAAT--GTCAAAGCGAAAATTCAAGATAAAGAGGGTATACCGCCA 167 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| | || || || || ||||| | || || | ||||| |||||||| Sbjct 168 GATCAGCAACGTCTGATCTTCGCTGGCAAACAGCTCGAAGATGGACGCACATTGTCCGAC 227 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGA 28019 |||||||| ||||| || || | || |||||||||||| |||||||||| || Sbjct 228 TACAACATACAAAAGGAATCGACGCTTCACTTGGTTTTGCGTCTGCGTGGCGGTGA 283 >seq10185 Length=35228 Score = 114 bits (126), Expect = 9e-21 Identities = 168/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| ||||| ||||||||||| |||||| |||||| | || || ||| Sbjct 2768 AAAATGCAAATCTTTGTAAAAACTCTTACCGGGAAAACTATTACCTTGGAGGTAGAACCT 2709 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | | || || | ||| || ||| ||||| || ||||||||| |||| | Sbjct 2708 TCGGATACTATCGAGAAT--GTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAG 2651 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| || |||||||| || || |||||||| || | ||||| || || || | Sbjct 2650 ATCAGCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGACGCACATTATCTGACT 2591 Query 27965 ACAACATCCAAAAAGAG--AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||| |||||| | ||||| ||| |||| | || || ||||| || Sbjct 2590 ATAATATCCAGAAAGAGTCAACACTT--CATCTGGTGCTCCGCTTACGTGGTGG 2539 >seq4449 Length=67262 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || |||| || || || || || || ||||| || ||||| |||| Sbjct 64374 GACAAAGAGGGAATTCCTCCAGATCAACAGCGTTTGATATTTGCTGGCAAACAGCTGGAA 64433 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | | || || ||||| ||||||||||| |||||||||||||| ||| Sbjct 64434 GATGGCCGCACCCTCTCTGACTACAATATCCAAAAAGAATCTACTTTGCATTTGGTGTTG 64493 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| | ||||| |||| Sbjct 64494 CGTCTACGTGGTGGCG 64509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355595956257318