Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq56942 107 2e-18 seq4449 93.3 4e-14 >seq56942 Length=2534 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || ||||| || |||||||| || || |||| | ||| ||| | Sbjct 268 CGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGACAATGTGCGTCCA 209 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||||||||| || || || ||||| ||||| || | || | | |||||| Sbjct 208 TCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGTATACCCTCTTTA 149 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| ||||| || | | ||| || | || || |||| ||| || Sbjct 148 TCTTGAATTTTCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAACTTCCAGCGTAATC 89 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | || || ||||||||||| |||||||||||||| ||| Sbjct 88 GTCTTACCAGTCAGCGTTTTCACAAAGATTTGCATTTTT 50 >seq4449 Length=67262 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| || | || || ||||||||||| | || |||||||| ||||| || || | Sbjct 64508 GCCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGA 64449 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || || | || || ||||||||||| |||||||| | |||||| || || | || Sbjct 64448 GAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGG 64389 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | |||||||||| || || ||||| | | | ||||| | ||| || Sbjct 64388 AATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAAC 64329 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | ||||| |||| ||||| || || ||||| ||||| ||||| || Sbjct 64328 CTCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCATGTT 64278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429223987665242