Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq56942 134 3e-26 seq54531 114 3e-20 seq48170 109 1e-18 seq19891 107 5e-18 seq10185 107 5e-18 seq4449 105 2e-17 seq18278 98.7 2e-15 seq6677 98.7 2e-15 seq5084 95.1 3e-14 seq4760 89.7 1e-12 seq18255 87.8 4e-12 seq41589 86.0 1e-11 seq4036 86.0 1e-11 >seq56942 Length=2534 Score = 134 bits (148), Expect = 3e-26 Identities = 167/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | ||| || || ||||| ||||| | ||||| |||| ||| || Sbjct 275 ACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGACAATGT 216 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||| || ||||||||||| || ||||| || || ||||| ||||| Sbjct 215 GCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGTATACC 156 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 || || ||||| || ||| || || ||| || || ||||| || | ||| || || | Sbjct 155 CTCTTTATCTTGAAT-TTTCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAACTTCCA 97 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| |||||||| || |||| ||||| | || | ||||||||| Sbjct 96 GCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCATTTT 51 >seq54531 Length=27647 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || || ||| | | || ||||| ||||| || ||||| ||| | || || Sbjct 26988 CCAAATTTATAATGTAATTGTAATTGCTCATGCTTTTGTAATAATTTTTTTTATAGTAAT 26929 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || || |||||||| | ||||| ||||| |||| |||||||| Sbjct 26928 ACCAATTATAATTGGAGGATTTCGAAATTGACTAGTTCCATTAATACTTGGAGCTCCTGA 26869 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTAT 7726 ||| || || || | | || |||||||||||||||||||| | ||| | |||| Sbjct 26868 TATAGCATTCCCTCGAATAAATAATATAAGTTTTTGATTACTTACTCCTGCATTAT 26813 >seq48170 Length=4534 Score = 109 bits (120), Expect = 1e-18 Identities = 119/157 (76%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| |||| || ||||| ||||| || ||||| ||| | || || Sbjct 1670 CAAATTTATAATGTAATTGTTACTGCTCATGCTTTTGTAATAATTTTTTTTATAGTAATA 1611 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCT-GA 7670 || |||| || || || || ||||||||||| ||||| ||||| |||| |||||| || Sbjct 1610 CCAATTATAATTGGAGGATTTGGAAATTGATTAGTTCCATTAATACTTGGAGCTCCTGGA 1551 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGA 7707 ||| || || || | | || |||||||||||||| Sbjct 1550 TATAGCATTCCCTCGAATAAATTATATAAGTTTTTGA 1514 >seq19891 Length=3381 Score = 107 bits (118), Expect = 5e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| || | || ||||| ||||| | ||||||||| | || || Sbjct 1308 CAAATTTATAATGTAATTGTTTCTGCTCATGCTTTTGTAAAAATTTTCTTTATAGTAATA 1367 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || || | || || || || ||||||||| | ||||| ||||| |||| ||||||||| Sbjct 1368 CCTATTCTAATTGGAGGATTTGGAAATTGACTAGTTCCATTAATATTTGGAGCTCCTGAT 1427 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || || ||| | | || ||| ||||||||| |||||| || ||| | ||| Sbjct 1428 ATAGCATTTTCTTAAATAAAAAATCTAAGTTTTTTATTACTTCCTCCTGCATTA 1481 >seq10185 Length=35228 Score = 107 bits (118), Expect = 5e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || || || ||||| |||| ||| || || | || || | |||||| Sbjct 2554 AGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGATAATGTGCGTCCATCT 2613 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||| || || | ||||| || || || ||||||||||| || ||| Sbjct 2614 TCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTATCT 2673 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || || ||| ||||| || || || | ||| || || || || || || Sbjct 2674 TGAAT-TTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTACCTCCAAGGTAATAGT 2732 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || | |||||||| || | ||||||||| Sbjct 2733 TTTCCCGGTAAGAGTTTTTACAAAGATTTGCATTTT 2768 >seq4449 Length=67262 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||||| |||||| || | | || | |||||||| ||||| || || Sbjct 64478 AGTAGATTCTTTTTGGATATTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCC 64419 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||| || || | || ||||| || || ||||| || || ||||| || ||||| || Sbjct 64418 AGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGAATCTTGGCTTT 64359 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| |||||| || || |||| || || || | ||||| || |||||||| | || Sbjct 64358 GACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATGGTTTTGCCCGTTAGGGT 64299 Query 225696 TTTTATGAACACTTGCATTTT 225716 || | ||| | ||||| || Sbjct 64298 CTTAACGAAGATCTGCATGTT 64278 >seq18278 Length=18629 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| ||||| ||| |||| || ||||| ||||| || ||||| ||| | |||| Sbjct 9645 CAAATTTATAACGTAATTGTTACTGCTCATGCTTTTGTGATAATTTTTTTTATAGTTAAA 9704 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || | || || ||||||||||| ||||| ||||| |||| ||| ||||| Sbjct 9705 CCAATTATAATTGAAGGATTTGGAAATTGATTAGTTCCATTAATACTTGGAGCTTCTGAT 9764 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAG 7700 || || || || | | || ||||| || Sbjct 9765 ATAGCATTCCCTCGAATAAATAATATCAG 9793 >seq6677 Length=9565 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || || ||| |||| || ||||| ||||| || ||||| ||| | || || Sbjct 8228 CCAAATTTATAATGTAATTGTTACTGCTCATGCTTTTGTAATAATTTTTTTTATAGTAAT 8169 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || || ||||||||||| ||||| ||||| |||| ||||| || Sbjct 8168 ACCAATTATAATTGGAGGATTTGGAAATTGATTAGTTCCATTAATACTTGGAGCTCCAGA 8109 Query 7671 TATGGCTTTTCC 7682 ||| || || || Sbjct 8108 TATAGCATTCCC 8097 >seq5084 Length=7650 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 |||| || || || || ||||||||||| ||||| ||||| |||| ||||||||||| | Sbjct 1144 TTATAATTGGAGGATTTGGAAATTGATTAGTTCCATTAATACTTGGAGCTCCTGATATAG 1085 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 | ||||| | | || |||||||||| ||||||||| || ||| | ||| Sbjct 1084 CATTTCCTCGAATAAATAATATAAGTTGTTGATTACTTCCACCTGCATTA 1035 >seq4760 Length=7449 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || || || ||||| | || |||||| || || || | | |||| | Sbjct 2066 AGCACCAGATGAAGTGTTGAATCTTTCTAGATATTGTAGTCCGCTAATATGCGTCCATTT 2007 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||| || || | |||||||| || || ||||||||||| || ||| Sbjct 2006 TCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGCTCTGGTGGAATACCTTCTTTATCT 1947 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 | || ||| || || | | |||| | || ||||| | ||| | || || | || || Sbjct 1946 TAAAT-TTTAGCTTTTATATTTTCGGTAGTATCTGAAGGTTCTAGCTCCAAGTTAATGGT 1888 Query 225681 CTTGCCCGTCAA-AGTTTTTATGAACACTTGCATTTT 225716 || | ||| || |||||||| || | ||||||||| Sbjct 1887 -TTTCTCGTTAAGAGTTTTTACAAAGATTTGCATTTT 1852 >seq18255 Length=11504 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| ||||||| || ||| ||| || |||| ||||| || |||||||| | ||||| Sbjct 149 CAAATTTACAATGTAATTGTTATAGCAAATGCTTTTGTAATAATTTTCTTCATAGTTATA 90 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || | || || |||||||| ||||| || || ||| ||||||||| Sbjct 89 CCTTTTATAATTGGATGGTTAGGGAATTGATTAGTTCCATTCATACTTGCAGCTCCTGAT 30 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAA 7699 || || ||| | | | || ||||||| Sbjct 29 ATAGCATTTGCTCGAATAAATAATATAA 2 >seq41589 Length=1589 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 7630 TTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTT 7689 || ||||||||||| ||||| ||||| |||| ||||||||||| || || || | | Sbjct 586 TTTGGAAATTGATTAGTTCCATTAATACTTGGAGCTCCTGATATAGCATTCCCTCGAATA 645 Query 7690 AACAATATAAGTTTTTGATTACTACCGCCT 7719 || |||||||||||||||||||| || ||| Sbjct 646 AATAATATAAGTTTTTGATTACTTCCTCCT 675 >seq4036 Length=16844 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 |||| || || || || ||||||||||| ||||| ||||| |||| ||||||||||| | Sbjct 10021 TTATAATTGGAGGATTTGGAAATTGATTAGTTCCATTAATACTTGGAGCTCCTGATATAG 9962 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACT 7712 | || || | | || |||||||||| ||||||||| Sbjct 9961 CATTCCCTCGAATAAATAATATAAGTTATTGATTACT 9925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191592531115196