Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq56942 125 5e-24 seq4449 105 5e-18 seq10185 89.7 4e-13 >seq56942 Length=2534 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | ||| |||| ||||||||| |||||||| |||||||| |||| Sbjct 280 CCGCCACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGAC 221 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 | | ||| | || || ||||| || || || ||||||| ||| |||||||||| || Sbjct 220 AATGTGCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGT 161 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | ||| || || || || ||| |||| | ||| | || ||||| | | ||| || Sbjct 160 ATACCCTCTTTATCTTGAATTTTC-GCTTTGACATTCTCAATCGTGTCCGATGGTTCAAC 102 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| |||||||||||| || || || || ||||| ||||||||||| Sbjct 101 TTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 >seq4449 Length=67262 Score = 105 bits (116), Expect = 5e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || |||||||| ||||| || | ||| ||| | || |||||||| || || ||||| Sbjct 64471 TCTTTTTGGATATTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAT 64412 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||||||||| ||||||| ||| | || || || ||| ||||| || | || Sbjct 64411 ATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTT 64352 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || || || | || || ||||| | || || || || ||||| |||||||| ||| Sbjct 64351 TCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACG 64292 Query 44327 AAGATTTGCATGATGT 44342 ||||| |||||| ||| Sbjct 64291 AAGATCTGCATGTTGT 64276 >seq10185 Length=35228 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||| ||||| || ||| || ||||| || || || | | | ||| | || || Sbjct 2556 CACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGATAATGTGCGTCCATCTTC 2615 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || ||||| |||||||| |||||||||| || | |||||| || || Sbjct 2616 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTATCTTG 2675 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || |||| | ||| | || || || | | ||| ||||||| ||||| || | Sbjct 2676 AATTTTA-GCTTTTACATTCTCGATAGTATCCGAAGGTTCTACCTCCAAGGTAATAGTTT 2734 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || || || || ||||||||||| Sbjct 2735 TCCCGGTAAGAGTTTTTACAAAGATTTGCAT 2765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359720865512778