Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eristalis_20dimidiata_20[genbank_20GCA_5F001015145.1_202015-05-29] 146,196 sequences; 315,428,702 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq76857 118 6e-22 seq75000 114 7e-21 seq54391 109 3e-19 seq9439 109 3e-19 >seq76857 Length=1447 Score = 118 bits (130), Expect = 6e-22 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| |||| |||||||| |||||||||| ||||||||||||||||||||| Sbjct 243 AAAAAAAAATTAAAT-GGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCAC 301 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 302 GACGCTCTAACCAACTGAGCTAATGGGCC 330 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 480 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 539 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 540 TGAGCTAATGGGCCG 554 >seq75000 Length=5236 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| |||| ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 4991 AAAAAAAATTCAA--TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCAC 5048 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 5049 GACGCTCTAACCAACTGAGCTAATGGGCC 5077 >seq54391 Length=1625 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 907 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 966 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 967 TGAGCTAATGGGCC 980 >seq9439 Length=3869 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 2903 GGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACT 2844 Query 11517 GAGCTAATGGGCCG 11530 |||||||||||||| Sbjct 2843 GAGCTAATGGGCCG 2830 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261025284458896