Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eristalis_20dimidiata_20[genbank_20GCA_5F001015145.1_202015-05-29] 146,196 sequences; 315,428,702 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq146010 109 6e-19 >seq146010 Length=1781 Score = 109 bits (120), Expect = 6e-19 Identities = 675/1068 (63%), Gaps = 59/1068 (6%) Strand=Plus/Plus Query 41103 TCGTGAATACCAATGTATCCTAGGGACACTGAACTTCTACCGTTTTTAAATAACTCAATT 41162 || || || |||||||| || || || | |||| || || ||||| |||| ||| | Sbjct 187 TCATGTATTCCAATGTAGCCAAGAGAGATTGAAGCTCGTCCATTTTTGAATATTTCAGAT 246 Query 41163 ATA---TCGTCATCAGGTTTAAGACGAACCCCGAATGCACCTTCTTGGTAAAGAATAGGA 41219 ||| ||||| || ||||| |||||| || | || ||||| || | ||||| Sbjct 247 ATACTATCGTCTTCT--TTTAA-ACGAACGCCACAAGCGCCTTCCATATATAAGATAGGG 303 Query 41220 GCAACAGTAGCTTTAACTCCTTTTAAGGAACTAATTCTACACATCAATGCTTCAAAACAT 41279 |||||| ||||||||| || | ||| | || | | ||| ||||||| |||| Sbjct 304 GCAACACGAGCTTTAACACCATCTAAACGAGCGATACGATTCATTAATGCTTTTTTACAT 363 Query 41280 AAATCCATTCGCTCATTGAACAATTCGGCAAATTTCTGTTCATTGAACTGTGTTCCAATA 41339 ||| | || | || || ||||| |||||| ||||| || | | |||| Sbjct 364 AAAATTAAGCGGTTATCCAATAATTCCCAAAATTTGCTTTCATCTCCATGGGCTTCAATT 423 Query 41340 TAAGAATCTAGCGCAATGCGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCA 41399 ||||| || || | || | ||| ||||| | |||||| ||||| Sbjct 424 ------------GCAATTCGCGGTAAGTTTAAACTTATGACACCTAAATTATTTCGTCCG 471 Query 41400 TCAAGAATTTCATTACCAGTCGAATCTTTC-CATACACTC-AAGAAA-CTACGACAACCC 41456 ||| ||| || || ||| |||| | |||| || | |||||| ||||| || ||| Sbjct 472 TCATGAACTTGCTTGCCA------TCTTCCTCATATACGCCAAGAAAGCTACGGCATCCC 525 Query 41457 ATTGGAGAAACAGGAATAGATGAACCGGTGATAGC------TTTATTGTTCTTAGCCGAA 41510 ||||| | |||| ||||| || | || ||||| || || || Sbjct 526 ATTGGCGTTTT--GAAT----GAACCCGTTACCGCGACCACTTTATCGTAATTT----AA 575 Query 41511 ATGATGTCAGGATACATTCTTTTACTTGCACACTCTAGAGCAAGCTGCTTAATATCATAG 41570 | || || || ||||| | ||||||||||| |||| || || | || |||||||| Sbjct 576 A--ATATCGGGGTACATACGCTTACTTGCACATTCTAATGCGAGTTTTTTGATATCATAA 633 Query 41571 TTCGGATCGTCTTTATAAAGATTAACACCTTCTTCAAC-GAACATAACAAGTTTAGGGAA 41629 || ||| | | | ||||||| || |||| | | | | | ||| ||| || || Sbjct 634 TTGATATCACCAACCTTATGATTAACGCCATCTTTTATTGCAAACACCAATTTT-GGAAA 692 Query 41630 AATAGGAGTTATCCCGTCACGACCAAGGCCTTTAATACGATTTTTCAGAATTGCTTTCTG 41689 || | ||| | || || | ||||| | ||| |||| | ||| | || || Sbjct 693 AACTGCTGTTTTGTGGTTCTTTCCTAATCCTTTTAAACGTATTTTTAAAATAGATTCTTG 752 Query 41690 AATCATTCGTTCAGTCCAGTCAGTTCCCGTA-CCAAATGTAATTGTTACAAAAGGCGTTT 41748 || | |||| | ||| | || || | ||||| || ||| ||||| ||||||| Sbjct 753 GATGAGTCGTG-ATTCCCAACTTTTACCTAATCCAAAGCCAAATGTAACAAATGGCGTTT 811 Query 41749 GTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATA 41808 | || || | | ||| || || ||||| || ||| || |||||||||||| || Sbjct 812 GACCATTAGCGGTGTGGAGTGTGTTCACTTCGTACTCAAGAGATTGGAATGCATCATAAC 871 Query 41809 CGTCTTTTTCTGTTTTAGATTGGGCATAAT--TCAACGCATCAGCGATTTGCCATTTTTC 41866 |||||||| || | || ||||| | ||| | || |||||||| | | Sbjct 872 ACTCTTTTTCAGTGCGATTTTTTGCATAGTGGTCA--GGATTTTTTATTTGCCACTCTGT 929 Query 41867 TGCATCCTCAATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATC--T 41924 || | | |||||||| ||| || ||||| | | | || | ||| | Sbjct 930 CGCGACTTGCTTATGTTTTTGATAACTGATACTAACAAATTTTGCTAATATCTCATCGAT 989 Query 41925 AC-ATTCGCAAAAGTCGTTCCACCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGC 41983 || ||| || |||||||||||||| |||| || ||||| ||| ||||||| || Sbjct 990 ACGATT---AATTGTCGTTCCACCGTAAATATGGCTTGCCACCTGAGCAATAATTTGAGC 1046 Query 41984 CATAATTGCAGTAGCAACGCCGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTT 42043 | | | || || || | || |||||||| | |||||| | || || || | || Sbjct 1047 CGTGACCGCGGTTGCCGTTGCAATAGATTTAGGCGGTTCAATTTCGGCGTTGCCCATTTT 1106 Query 42044 AAATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGC 42103 ||| ||||| |||||| || | || ||| | ||| ||||||| | ||||| | Sbjct 1107 AAAACCGTTGGTAAGCATGCCATCTAGATCGATTAACATGCAATTAAACATTGGAAAAAA 1166 Query 42104 AGGGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGC 42151 || | |||||| | |||||| ||||||| ||| | ||||| || Sbjct 1167 TGGTGCATAATCCAAATCATGATAATGAATTTCTCCACGGTCATGGGC 1214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533222179133920