Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eristalis_20dimidiata_20[genbank_20GCA_5F001015145.1_202015-05-29] 146,196 sequences; 315,428,702 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq79726 125 8e-24 seq25219 104 3e-17 >seq79726 Length=8148 Score = 125 bits (138), Expect = 8e-24 Identities = 352/537 (66%), Gaps = 4/537 (1%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| |||||| || || |||| ||||| || ||||| || || ||||| Sbjct 4725 GAAGCCAAGTTGCAAACAGCAATCTCATCCGGTGCGGAGTACTCGACAATCTCAGTGCAA 4784 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | |||| ||||||||||||||||||||| || ||| ||| ||| || || || Sbjct 4785 AGATTACTGCACTTGATGGTGCCGATGTTCTGTTGATTGGACTTGCGGTTGCAAGCATCT 4844 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 |||||| ||||||||| || |||||||| || ||| | | || | | ||| | Sbjct 4845 TTGTAGAGCATGTACGGAGTTCCGGTCTCCACTTGAGATTCTATAATGGCAAACCAAAGC 4904 Query 79237 TCCCGGGCCCGGACAACCTTCT-TGTACCGA-CCCTGTGCGACGTACGTCCGGTACAACT 79294 | || ||| |||| | | || |||| |||| ||||| || Sbjct 4905 GTTTGTGCTTTCACAG--TTCTGTTTGCCTTTCCCTCCTTCTCGTAACGGGTGTACAGCT 4962 Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | | ||| |||||| |||| || ||| || ||||||| || |||||||||| Sbjct 4963 CCTCGAACTTCTCCCCCCAGACTTCATGCAAACCGGGGCACTTATGTGGGCACATCAAAG 5022 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 |||||| |||| || || || |||||| || || || ||||| || || || Sbjct 5023 ACCAGTCGCCGTCGGCTTCCACTCGCTTCATGAACAGATCGGGAATCCATAGAGCATAGA 5082 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 | | ||||| | ||||||| | || |||| || || | || || | Sbjct 5083 ACAAATCGCGAGCTCTGTTCTCCTCCTTTCCGGTGTTCTTCTTCAAATCCAAGAACTCAA 5142 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 |||||| | ||||| ||||||| || |||||||| | ||| ||||||||||| | Sbjct 5143 AGATGTCCGAATGCCAGGGCTCCAAGTAAATGGCGAAGGCACCTGGTCGCTTGCCGCCTC 5202 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGT 79591 | |||| ||| ||||| || ||||||||| ||| ||||| || || | ||||| Sbjct 5203 CTTGGTCGACATACCGAGCGACGTTGTTGAACCCTCTCAGCATTGGAACAAGGCCGT 5259 >seq25219 Length=1370 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 59980 AACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038 ||||| |||| || ||||| ||| || ||||| || |||||| ||| ||| | Sbjct 240 AACGTATCATTGCATTTGC-TGCAGTTGAAGGGATTTTCTTCAGCGGCAGCTTCGCATCA 298 Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 || |||||||| || ||||| || |||||||| || || | |||||||||||||||||| Sbjct 299 ATCTTCTGGCTGAAGAAGCGCGGTCTCATGCCCGGTCTTACATTCTCCAACGAGCTGATT 358 Query 60099 TCCCGGGACGAGGGCCTCCAT 60119 || || |||||||| |||||| Sbjct 359 TCACGCGACGAGGGACTCCAT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547522398354240