Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eristalis_20dimidiata_20[genbank_20GCA_5F001015145.1_202015-05-29] 146,196 sequences; 315,428,702 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq145875 114 1e-20 seq123113 84.2 2e-11 >seq145875 Length=1531 Score = 114 bits (126), Expect = 1e-20 Identities = 244/355 (69%), Gaps = 12/355 (3%) Strand=Plus/Minus Query 79775 aCAATCTCATCAAACACCTTCGATGGATCAGTATAAAGATTTCGCATGATATGTGTATAT 79834 ||||| |||||||| || ||||||||||| | | || || || ||||| ||||| Sbjct 1397 ACAATATCATCAAAGACAATCGATGGATCATTGACGATGTTACGAATAATATGGGTATAA 1338 Query 79835 GAACGGCTGTGAATAGTTTCACTAAAAGTCCACGTAGCAACCCATGTATCAAGGCTTGGG 79894 || || ||| |||||||| ||| | |||||| ||||||| || |||| ||| || Sbjct 1337 GATCGCGAGTGGATAGTTTCTGAAAATGACCACGTTTCAACCCAAGTTTCAA-GCTCAGG 1279 Query 79895 T-CTGAAATTAATGACATAAGTACAGCAGATGGCGCGCGACCCTGAATGCTATCCA--AA 79951 | ||||||||| | | | | | || || ||| || ||||| ||||| || Sbjct 1278 TATTGAAATTAAAGGGAGCAATGCGACATTCGGACTGCGTCCTTGAATCGAATCCAGTAA 1219 Query 79952 AGTGATTGATACTTCAGGTTATTAGTAAAAATATTCTGTTGATACTGAGGAAGTTTATTA 80011 ||| |||||| || | |||| | ||||||||| | || || | ||||||| | | Sbjct 1218 AGT--TTGATATTTTAAGTTACTGATAAAAATATGTTTTTCATGTTCAGGAAGTCCAGCA 1161 Query 80012 -AATTGTGCAGCATCCATCATCAAGTTT--ACTTCTTCAGGACGCCAGAAAAATGATAAT 80068 ||| | | ||| | | || | | |||||||| || ||||| ||||| ||||| Sbjct 1160 TAATCGATTCG-ATC--TTGTGAAATATCCACTTCTTCTGGCCGCCAAAAAAAAGATAAC 1104 Query 80069 TGCTTTTCAGTCAAATCTTCAAAAACTTTATGGCGTTGAATATCATAACGCGCAA 80123 ||||||||| | | | |||||||| || || ||| |||||||||||||| Sbjct 1103 TGCTTTTCAATTAGTTTTTCAAAAATTTCATATTTTTGTTGATCATAACGCGCAA 1049 >seq123113 Length=2487 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 152166 CCGCCATATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTG--CAGTAGCAA 152223 || |||||||| |||||||| | ||| ||||||||| | | ||| |||| ||| Sbjct 2303 CCACCATATTGTAATGAAGCAACATTAGCAATAATTTGTG--AAACTTGAGCAGTTGCAG 2246 Query 152224 CGCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCCGTTCTCAAGCA 152283 ||| || |||| || || | |||||||||| ||||| || || | || Sbjct 2245 TTTGAATGGAACGGGGAGATTTAACTTCAGCATTACCAATTTTAAAACCATTAGTGAACA 2186 Query 152284 TTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCAGGGGAATAATCAATAT 152343 || |||| ||||| ||||||||||||| || |||| ||| ||| |||| || | || Sbjct 2185 TTTCTTTAAAATCAACTAAACAGCAATACGTTTCTGGAGTAGCGGGGTAATAGTCCAAAT 2126 Query 152344 CATGGAAATGAATA 152357 |||| |||||||| Sbjct 2125 CATGCCAATGAATA 2112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534787313692320