Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eristalis_20dimidiata_20[genbank_20GCA_5F001015145.1_202015-05-29] 146,196 sequences; 315,428,702 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq145875 122 1e-22 >seq145875 Length=1531 Score = 122 bits (134), Expect = 1e-22 Identities = 242/357 (68%), Gaps = 16/357 (4%) Strand=Plus/Plus Query 20065 TTGCGCGTTACGATACCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGA 20124 |||||||||| ||| || ||| ||||||| || ||||| |||||||||||||||| Sbjct 1049 TTGCGCGTTATGATCAACAAAAATATGAAATTTTTGAAAAACTAATTGAAAAGCAGTTAT 1108 Query 20125 GTTTCTTCTGGCGTCCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATT 20184 ||| || ||||| || ||||| || || | | | ||| |||||||||| | Sbjct 1109 CTTTTTTTTGGCGGCCAGAAGAAGTGGATATTTCACAAGATCGAATCGATTATGCTGGAC 1168 Query 20185 TACCAGAACATGAAAAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATA 20244 | || ||||||||||||||||| |||| || || || ||||| | ||||| ||| Sbjct 1169 TTCCTGAACATGAAAAACATATTTTTATCAGTAACTTAAAATATCAAACTTTACTGGATT 1228 Query 20245 CCGTTCAGGGACGTGCTCCTAA-----CACTGCT---TTTATGTCCATCGTATCTGATGT 20296 | |||| ||||| ||| || || |||| |||| | || || |||| Sbjct 1229 CGATTCAAGGACGCAGTCCGAATGTCGCATTGCTCCCTTTAATTTCA--ATACCTGA--- 1283 Query 20297 AACACTTGACACATGGATTCCTACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTA 20356 ||||| || ||| || || ||| | || || || || |||||| || ||||| Sbjct 1284 ---GCTTGAAACTTGGGTTGAAACGTGGTCATTTTCAGAAACTATCCACTCGCGATCTTA 1340 Query 20357 TACACACATTATGCGCAACGTGTACGAAGATCCGTCCAAGATCTTTGACGAAATCGT 20413 ||| || ||||| || ||| | | | ||||| || | ||||||| || || || Sbjct 1341 TACCCATATTATTCGTAACATCGTCAATGATCCATCGATTGTCTTTGATGATATTGT 1397 Score = 113 bits (124), Expect = 5e-20 Identities = 542/845 (64%), Gaps = 39/845 (5%) Strand=Plus/Plus Query 19072 TCGGCGTTCAATCTTGGTAAAATTGAAAGTCTTCATGATTTCGAAAAAGCTGCCCGCGTT 19131 || || || ||||||||| |||||||| |||| ||||||| ||| || || | Sbjct 1 TCCGCATTTAATCTTGGTGAAATTGAATCTCTTGATGATTTTGAAGAATTAGCTGATTTG 60 Query 19132 GCTGTTCGAGCACTGGATAACCTGCTTGATTATCAAGAATATCCGATGGAAGCAGCATTA 19191 ||||| || ||||| ||| || || ||||||||||| || || || || ||| | Sbjct 61 GCTGTACGTGCACTTGATTCACTACTGGATTATCAAGATTACCCAATTCCTGCGGCAAGA 120 Query 19192 A-AAGGTC--TGAAACGTCGTTCATTAGGAATCGGTATTACCAACTTTGCTTATTATCTC 19248 | | || |||| ||||| |||| || |||||| | | ||| | || || ||||| Sbjct 121 ACATCATCAATGAACCGTCGAACATTGGGGATCGGTGTCATCAATTACGCATACTATCTT 180 Query 19249 GCGAAAAATTACGTGAAATATTCAGACGGTTCAGCTAATGAATTGGTTCACGAAATGATG 19308 || || || ||| |||||||| || || |||||| | || || || | Sbjct 181 GCTAAGCATGGCGTTAAATATTCTGATGGAAGTGCTAATAACTTAACGCATAGAACATTT 240 Query 19309 GAAGCATTCCAGTATTATCTGCTTAAAGCTTCGATGGAATTAGCAAAAGAGCGTGGTGCT 19368 |||||| | || |||||| |||| |||||||| | | | || |||||| || || Sbjct 241 GAAGCAATGCAATATTATTTGCTCAAAGCTTCAAACAACCTTGCTAAAGAGAAAGGGGCA 300 Query 19369 TGTGAATATTTCCACAAAACGTCATATTCTCGCGGCGTTCTACCGATTGATCGATACAAG 19428 ||| | || | |||| | || || | || || | |||||||| || ||| Sbjct 301 TGTCCTTTATTTAATGAAACAACCTACTCACAAGGTATTTTGCCGATTGACACTTATAAG 360 Query 19429 AAAACTGTTGACAATCT---TGTTGATCCAGTGTATCGTATGGACTGGGAAGCGCTTCGT 19485 || | ||| | | | || ||| | || ||| || ||||| || | || Sbjct 361 AAGGAGTTAGACGCTTTAACTAAAGAGCCACTCCAT--TAT-GAATGGGATGCTTTGCGA 417 Query 19486 GCCGACATCATGAAATATGGTCTTCGTAACTCTACGTTGTCAGCGCTGATGCCTTGTGAA 19545 | || | ||||| ||| | ||||||||||| || || ||||| ||||| | ||| Sbjct 418 GAATCAATTAAAAAATACGGTTTACGTAACTCTACTTTATCTGCGCTCATGCCGTCGGAA 477 Query 19546 TCAAGTTCACAGATCACCAACTCCACGAACGGTATCGAGCCGCCTCGTCAGTTGCTG--A 19603 | |||||| || | || | || || || ||||| |||||||| || | || | Sbjct 478 ACGTCTTCACAAATTTCTAATGCGACTAATGGAATCGAACCGCCTCG--AGGTTATGTCA 535 Query 19604 GTGTAAAACAGTCTAAAGACGGTGTACTGAATCAGCTTGTTCCTGAAGTTGAAATTTTAG 19663 | |||||| || ||||| || | | ||| |||||||||| || | | || Sbjct 536 GCGTAAAAGCATCGAAAGATGGCATTTTACGTCAAGTTGTTCCTGA--TT--ATCATGAG 591 Query 19664 CTT----CTGAGTATGAACTAGCATGGCAAATGGCAGATAAAGGTATGAAAGGTTATCTG 19719 ||| | || ||| || ||||||||| | ||| || | || || || Sbjct 592 CTTAAAAATTTCTACGAATTATTATGGCAAATTCC---TAA---TAATCACGGGTACTTG 645 Query 19720 TCTCTGGTTGCTATCATGCAAAAATTCTGTGATCAGTCAATCAGTGCAAACACTTATTCC 19779 || |||| ||||||||| ||||| |||||| || || || || ||| ||| | Sbjct 646 CAACTTGTTGGTATCATGCAGAAATTTATTGATCAATCGATTTCAGCCAATACTAATTAC 705 Query 19780 AACCC--GTACATTTATCCTGGTGATAAAGTTCCGATGGA--AGTTATGCTTGCTGATTT 19835 | || | ||||| | ||||||||| || ||| | ||||| ||||| || || Sbjct 706 GATCCAACAAAATTTA--CCAATGATAAAGTACCTATGAAACAGTTA--CTTGCAGACTT 761 Query 19836 GATCTTTATGCAAGTTCAT--GGTATTAAAACCATTTACTATCATAACACCCGAGACGGT 19893 ||| || | || || || ||||| |||| |||||||| || ||||| ||| Sbjct 762 --ACTTACAGCTTATAAATACGGCATAAAAACGCTTTATTATCATAATACTCGAGATGGT 819 Query 19894 GCAGA 19898 ||||| Sbjct 820 GCAGA 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581671079096800