Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eristalis_20dimidiata_20[genbank_20GCA_5F001015145.1_202015-05-29] 146,196 sequences; 315,428,702 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq145875 91.5 2e-13 seq123113 84.2 2e-11 >seq145875 Length=1531 Score = 91.5 bits (100), Expect = 2e-13 Identities = 252/377 (67%), Gaps = 12/377 (3%) Strand=Plus/Minus Query 41194 TCATCATAATAACGTCCAATGGATTCAGCACGTTTCATAATAGCTTCATCTAATACAATT 41253 ||||||||||| | | ||| | | |||||||| ||| | || | ||||| Sbjct 1451 TCATCATAATAGCCAGCGATGTCTCCTGCACGTTTTTGAATTTCGGTATTTGTCACAATA 1392 Query 41254 TCATCAAATACCTTCGATGGATCAGTATAAAGATTTCGCATGATATGTGTATATGAACGA 41313 |||||||| || ||||||||||| | | || || || ||||| ||||| || || Sbjct 1391 TCATCAAAGACAATCGATGGATCATTGACGATGTTACGAATAATATGGGTATAAGATCGC 1332 Query 41314 CTGTGAATAGTTTCACTAAAAGTCCATGTAGCAACCCATGTATCAAGACTTGGGT-CTGA 41372 ||| |||||||| ||| | ||| || ||||||| || ||||| || ||| ||| Sbjct 1331 GAGTGGATAGTTTCTGAAAATGACCACGTTTCAACCCAAGTTTCAAG-CTCAGGTATTGA 1273 Query 41373 AATTAACGACATAAGTACAGCAGATGGTGCACGACCCTGAATGCTATCCA--AAAGTGAT 41430 |||||| | | | | | || || || || ||||| ||||| ||||| | Sbjct 1272 AATTAAAGGGAGCAATGCGACATTCGGACTGCGTCCTTGAATCGAATCCAGTAAAGT--T 1215 Query 41431 TGATACTTCAGGTTATTAGTAAAAATATCTTGCTGATATTGAGGAAG-CTTGTTAAATTG 41489 ||||| || | |||| | ||||||||| || | || || |||||| | | ||| | Sbjct 1214 TGATATTTTAAGTTACTGATAAAAATATGTTTTTCATGTTCAGGAAGTCCAGCATAATCG 1155 Query 41490 CGCAGCATCCATCATTAAGTTT--ACTTCTTCGGGACGCCaaaaaaaTGATAAAGATTTC 41547 | ||| | | || | | |||||||| || ||||||||||| ||||| || Sbjct 1154 ATTCG-ATC--TTGTGAAATATCCACTTCTTCTGGCCGCCAAAAAAAAGATAACTGCTTT 1098 Query 41548 TCAATAAGTTCTTCAAA 41564 ||||| |||| |||||| Sbjct 1097 TCAATTAGTTTTTCAAA 1081 >seq123113 Length=2487 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/179 (71%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 113842 GAAGCAACCTGTGCAGTAATTTGTGCCATAATTG--CAGTAGCAACTCCAATTGATTTAG 113899 |||||||| | ||| ||||||||| | | ||| |||| ||| | ||| || | Sbjct 2288 GAAGCAACATTAGCAATAATTTGTG--AAACTTGAGCAGTTGCAGTTTGAATGGAACGGG 2231 Query 113900 GAGTTTCAATCTGTGCATTACCAAGCTTAAATCCGTTCTCAAGCATTCCTTTTAAATCTA 113959 ||| || || | |||||||||| ||||| || || | |||| |||| ||||| | Sbjct 2230 GAGATTTAACTTCAGCATTACCAATTTTAAAACCATTAGTGAACATTTCTTTAAAATCAA 2171 Query 113960 CTAAACAGCAATTAGTAAATGGAAGAGCAGGGGAATAATCAATATCATGGAAATGAATA 114018 |||||||||||| || |||| ||| ||| |||| || | |||||| |||||||| Sbjct 2170 CTAAACAGCAATACGTTTCTGGAGTAGCGGGGTAATAGTCCAAATCATGCCAATGAATA 2112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534247501977280