Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eristalis_20dimidiata_20[genbank_20GCA_5F001015145.1_202015-05-29] 146,196 sequences; 315,428,702 total letters Query= NC_029058.1 Length=106071 Score E Sequences producing significant alignments: (Bits) Value seq40051 109 4e-19 seq50931 96.9 2e-15 >seq40051 Length=1617 Score = 109 bits (120), Expect = 4e-19 Identities = 86/102 (84%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 30466 GTTGCAACGGAGAATGAGGGATTTGAACCCTCGCACCGGTTTCCCGGCCTACACCCTTAG 30525 || ||||||||||| ||| |||| |||| ||||| |||| ||| ||||||||||||| Sbjct 1320 GTCGCAACGGAGAAGGAGAGATTCGAACTCTCGCGCCGGAAAACCGACCTACACCCTTAG 1379 Query 30526 CAGGGGCGCCCCTTCAACCAACTTGGGTAATTCTCCAAAATG 30567 |||||||||| ||||| || ||||| ||| |||||||||||| Sbjct 1380 CAGGGGCGCCTCTTCAGCC-ACTTGAGTACTTCTCCAAAATG 1420 >seq50931 Length=2692 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 4104 TTAAACCAAGGAGAAACTGTGAAAGCCAGAATGTCATTAATAACATAGATTAAGCTATTA 4163 || |||||||||||| || || || | || ||||| |||||| ||| || || Sbjct 2155 TTGAACCAAGGAGAAGTAGTAAATGCTAAAACATCATTTGCAACATAAATTGCACTGTTT 2096 Query 4164 ACTGCCATCGCCAAGGTTGCGTCACCTTGTGCAAATGTAACAGCCCATAGAATTAATTGG 4223 || ||| || || || || ||||| || |||| | ||||| | |||||| Sbjct 2095 ACAAACATTGCTAAAGTAGCAGAACCTTCCTTGAAAGTAATAAACCATAATACTAATTG- 2037 Query 4224 AAGATA--CCAGAAGCTAACCACCAGTAGTATTGGTTATTGTAACGCATAAAGCACATAA 4281 || || || || |||||||||||| ||||||| || ||||| | ||| || || |||| Sbjct 2036 -AGCTAGTCCCGATGCTAACCACCAGAAGTATTGATTGTTGTATCTCATGAAACAAATAA 1978 Query 4282 TTCCGGCAGTCAAACTAATTGCAAAACTAATAGCGTCAATCCATGGACG 4330 |||| ||||| |||| || || ||||||| || ||| ||||||| Sbjct 1977 TTCCAGCAGTTAAACAAACAGCGAAACTAAAGGCATCATAGAATGGACG 1929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338697843283392