Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq731 197 2e-45 seq967 131 2e-25 >seq731 Length=568950 Score = 197 bits (218), Expect = 2e-45 Identities = 210/275 (76%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 53056 CTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 53115 ||| ||||| ||| || | | ||||| |||||| || || |||||||| | ||||| Sbjct 414486 CTGGATAGAACCATTATTTGCTATAATTTCATTCTTCATATCCTCATTCCAAAGATTTCT 414545 Query 53116 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 53175 || |||||| ||| | | ||| ||||| || | |||||| ||||| ||||| ||||| Sbjct 414546 TTCAGTTAAATCTCGCAACAAATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCT 414605 Query 53176 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 53235 | || ||||||||||||||||| ||||| | |||||||||||||||||||||||| || Sbjct 414606 TCTTGTATAAATATTACTGGTATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGC 414665 Query 53236 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG-- 53293 ||| ||||| || ||||||||||| | | |||| ||||| || ||| ||||| | Sbjct 414666 AGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCGAATACC--ATGTTTAGCA 414723 Query 53294 ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328 ||||| |||||| | || ||||| ||| | ||| Sbjct 414724 ATTTTTGCTTTTAATGTTTTCCAATCCCATAAATC 414758 Score = 120 bits (132), Expect = 4e-22 Identities = 220/315 (70%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 || |||||||| ||||||||||| | || | | |||||| | |||||| ||||| | Sbjct 415895 TTACCTGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACA 415954 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 ||||| | | |||| || | ||| ||||| || ||||| | |||| || || ||| Sbjct 415955 TATATAGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 416014 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 ||||| ||||| | ||| ||||| | |||||| ||| ||||| || || || ||| | Sbjct 416015 TTATATACTCTGATCATAGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 416072 Query 54275 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAG 54331 | || || || |||||| | || | | || || || || || ||| |||| Sbjct 416073 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCCGATTTACTA 416131 Query 54332 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTT 54390 || | ||| || |||||| |||| ||| || || || || |||||||| || |||| Sbjct 416132 ATAAGTGCACACTTTTTTAATGTATTATATATTCCTTCAATGCTATCATCTTCCATTGTT 416191 Query 54391 AAGTAGAAAACAGCT 54405 || || |||||| || Sbjct 416192 AA-TAAAAAACAACT 416205 Score = 107 bits (118), Expect = 2e-18 Identities = 234/347 (67%), Gaps = 14/347 (4%) Strand=Plus/Plus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 |||| |||||||||||| | ||| || | || || |||| ||| ||||||||||| | Sbjct 415180 TACCCATAGGTCTATGTTTAAAATTTGATACTTTTGCCTCTGAAATCGGATAATAATTGA 415239 Query 53610 TATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 || |||| ||| | | || | | |||||| |||| | || || || || Sbjct 415240 CGTCGATAACTTTGTCTAAATTACGCGTAACAATT--TTTGTC-ACTTCTCGAAGCTTTT 415296 Query 53667 GAAAATCAAATTGTCCATCTAT-------TACAAACATGTTCAATGCAATAGATGCCAGA 53719 |||||||| || |||| ||| ||||||||| || | ||||| || || | | Sbjct 415297 GAAAATCATAT-GTCCTATTATCAGAATTTACAAACATATTTACAGCAATTGAGGCTAAA 415355 Query 53720 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 53779 || || || || | ||||| | | | ||| | || || ||||| || | ||||||| Sbjct 415356 TTGCACACTGCAATTTCATTTGGACTAGAATACTCTACAATTTCAGTACACAAATTACTA 415415 Query 53780 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 53839 |||||||| ||||| ||||||| ||||| || || || ||| |||||||| Sbjct 415416 CACTTGATTGTTCCCAAATTTTTATGATTTGATTTACGATTGCAATGATCTTTATAAAGC 415475 Query 53840 ATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA 53886 || | || || || ||||||| |||| | | ||| ||| |||| Sbjct 415476 ATATAAGGAGTTCCTGTTTCAACTTGGGCAACAAGAATAGCTGTCCA 415522 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||| || || |||||||||| | | |||||| |||| | |||||||| || Sbjct 415648 TTCAAATTCATCGCCCCAAACATCATGTAGACCAGGAGATTCGTGTGGACACATTAAACT 415707 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| | | | | || | |||||||||||||| |||||||| ||||| | ||| ||| Sbjct 415708 CCATTTTTCATTATTCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGCATAAAA 415767 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 || ||||| | ||||| ||| || || |||||| || Sbjct 415768 TAATTCTCTTGCTCTATTTTCTTCCTTACCTGTAGTC 415804 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 53383 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 53442 |||| ||| || || |||| |||| || |||||| || ||||| || || ||||| || Sbjct 414934 TCCTTTATAGGTTTCATATGTACCTTTCTCCTCAGCAAGCTCACAGCTAGCTTCTAAAGC 414993 Query 53443 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 53502 || |||||| | ||||| || |||| |||| || | ||||| || || ||||| Sbjct 414994 ACTGTAATATAACGTTTCAAATATCTGGATATTAAGCTTCTGTGCCTCTTCACTTTCAAA 415053 Query 53503 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 |||||| | | || ||| || ||||| | |||||||| |||||||| Sbjct 415054 TGGATATCGCATTAAAAGAAATGCATCTGCAAGACCTTGAACTCCAATACC 415104 Score = 91.5 bits (100), Expect = 2e-13 Identities = 182/269 (68%), Gaps = 8/269 (3%) Strand=Plus/Plus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 ||||||||||| || | |||| | ||| ||| | || ||||| || || ||||| Sbjct 416269 CTAGACATTTGTTGTTGTATAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 416328 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCATTGATG 54519 | ||| || | | ||| || || || ||| || ||||| || |||| |||| Sbjct 416329 TAACGTTCTGATAAAAAATTATAAGTTTCTATAACTCTTTCTATGTCTTCACCATGGATG 416388 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 | ||||| || | ||||||||| || || ||||||||||| | || | ||| Sbjct 416389 ----GCAACTGCAACTCTCATTAACATATGTTGTGGTCTTTCAACAACTTTCCCATGTAT 416444 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 ||| || ||||| |||| | ||||| |||||||||||||| || ||||||| Sbjct 416445 TTTTAGTAAGTAACTCCTTTCAAGCGTTTTGAAACCAAAATAGTTATAGCTGAAGTCTCT 416504 Query 54640 TTCGTAAATAATAACTGAGTTGAGTTTAT 54668 || ||||| || | ||||| | |||| Sbjct 416505 ATCATAAATTATTGCAGAGTTTAACTTAT 416533 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 ||||||| ||||||||||| ||| | ||| | || | |||||||| | || Sbjct 414212 TCCATCCATAAAAATGCATTGATGTCAATTTTTCTGTTGTTGGTTTAGCTATATGAACAT 414271 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||||| |||||| || || || || | ||||| |||||||||| ||| | | Sbjct 414272 TTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAGATTATTT 414331 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAA 53024 ||||||| |||||||||| |||||||||| Sbjct 414332 TTTGTGGTATTTCCCAAACTGTTTTATAAA 414361 >seq967 Length=1612715 Score = 131 bits (144), Expect = 2e-25 Identities = 104/125 (83%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 ||||| | ||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct 652949 TTAGAGAGGTCCACTTCTTCCACTGTCCAAAAAGATGCCTCAGCTTTTTTATACATATTC 652890 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATT 24740 || |||||| | ||||||| ||||||| |||||| ||| |||||||| | || | | Sbjct 652889 CAAATGTCAGGCCATTGAATAGGAAAAACAACAAACCTACGTGGATTTTCTTTTAGTAAT 652830 Query 24741 GGTTC 24745 ||||| Sbjct 652829 GGTTC 652825 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 23941 TTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCA 24000 ||| | | || ||||| || |||||||||||| ||||| || |||||| ||| | Sbjct 653886 TTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATTGGCACATAA 653827 Query 24001 TTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAA 24060 || || ||||| ||||| | || ||| || | ||| | || | |||||||||||||| Sbjct 653826 GTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATTCTTGTTCAA 653767 Query 24061 TAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG--ATACAATAA 24118 | ||| || ||| | ||||| ||| | ||| || | ||||| | |||| Sbjct 653766 TTTTGACAGCATCTTTAATAATTGATGTGACTCGATCCGGA---GGTGGTTTTTGTATAA 653710 Query 24119 -ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 24159 ||||| ||||| ||||||||||||||||| |||| |||| Sbjct 653709 TGTGTTTGAACATTAAACATGCGAAATCGCAATGTAACCCCT 653668 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 ||||||||||| ||| | ||| || ||| || ||||| |||||||| || | || | Sbjct 653559 CCTCGTCTCTAGAAATAAGTTCATTACTAAATGTAAGTCCTGGCATTAGACCTCTTTTCT 653500 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| | ||||| ||| ||||||||| |||||||| || ||||| | Sbjct 653499 TTAGCCAGAATATAGCAGCAAAACTGCCACTAAAGAAAATACCTTCTACCGCAGCAAATG 653440 Query 24277 CAA 24279 ||| Sbjct 653439 CAA 653437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592329241211280