Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq5459 105 6e-18 seq4862 95.1 1e-14 >seq5459 Length=1306269 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || |||| ||| |||| || |||||||||||| ||| ||| | | Sbjct 706330 AATGCAAATCTTTGTCAAGACACTGACAGGAAAAACCATTACCTTGGAAGTAGAAGCTTC 706271 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| |||||| ||||| ||||| | ||| ||||| Sbjct 706270 TGATACAATAGAGAATGTGAAGGCAAAAATCCAAGATAAGGAAGGAATTCCCCCTGATCA 706211 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | | |||||||| || ||||| ||||||||| | |||| || | ||||| || Sbjct 706210 GCAACGTTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGAGAACTTTGTCAGATTATAA 706151 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| || ||||| ||| |||| || | | ||||||| Sbjct 706150 CATCCAGAAGGAGTCAACTCTCCACTTGGTACTAAGGCTCAGAGGAGG 706103 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | |||||| |||| || |||||||| ||| ||| ||| | | Sbjct 721310 AATGCAAATCTTTGTGAAAACACTGACAGGGAAAACCATCACCTTGGAAGTAGAAGCTTC 721251 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || || || ||||| ||||| | || ||||| Sbjct 721250 TGACACAATAGAGAATGTGAAAGCTAAGATACAAGATAAGGAAGGAATCCCTCCTGATCA 721191 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | | |||||||| |||||||| || |||||| | ||| | |||||||| Sbjct 721190 GCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACACTTTTGGATTACAA 721131 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| ||||||||||| ||||| ||| |||||||| || | || ||||| Sbjct 721130 TATCCAGAAGGAATCCACTCTCCACCTGGTGTTAAGACTTCGTGGAGG 721083 >seq4862 Length=216935 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| ||| | || || || || ||||| ||| ||| || | Sbjct 39843 ATGCAAATTTTCGTCAAGACACTTACTGGAAAGACTATTACGCTGGAAGTAGAAGCCTCT 39902 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || |||| |||||| |||||||||||| | || |||||| Sbjct 39903 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 39962 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 |||||||| |||||||| || |||||| | |||||| || | || | | || || | Sbjct 39963 CAAAGACTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACGCTTT--CTGACTATA 40020 Query 29140 ATATTCAGAAGGAATCTACTCTTCA 29164 ||||||| || |||||||| || || Sbjct 40021 ATATTCAAAAAGAATCTACCCTCCA 40045 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 28957 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 29016 |||| ||||| || ||| | |||||| |||| |||||||| || ||| ||| || Sbjct 34367 TAAACATGCAGATCTTCGTAAAAACACTGACAGGCAAAACAATAACCCTCGAGGTTGAGG 34426 Query 29017 CCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 29076 | |||| || | | | |||| |||||| ||||| |||||| | || | Sbjct 34427 CATCAGATACAATTGAAAACGTTAAAGCTAAAATTCAAGATAAGGAAGGTATCCCACCTG 34486 Query 29077 ATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGA 29134 ||||||||||| | |||||||| || |||||| | |||||| || | || | |||| Sbjct 34487 ATCAACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACGCTTT--CCGA 34544 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| || |||||||| || || | || | ||| | ||||| || Sbjct 34545 CTATAATATTCAAAAAGAATCTACCCTCCATCTTGTACTCCGACTTCGAGGTGG 34598 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || | || || ||||| || ||| ||| ||| | | Sbjct 40983 ATGCAAATTTTTGTCAAGACTCTCACTGGGAAAACTATAACCCTGGAAGTTGAAGCATCG 41042 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| |||||| ||||| |||||| | || |||||| Sbjct 41043 GACACAATTGAGAATGTTAAAGCTAAAATTCGTGATAAGGAAGGTATCCCACCTGATCAA 41102 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| |||||||| || |||||| |||||||| | || | | ||||| ||| Sbjct 41103 CAAAGACTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACGCTTTCTGATTATAAT 41162 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 |||||||| ||||| ||||| || Sbjct 41163 ATTCAGAAAGAATCAACTCTGCA 41185 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| ||| | || || || || ||||| ||| ||| | | Sbjct 38931 ATGCAAATTTTCGTCAAGACACTTACTGGAAAGACTATTACGCTGGAAGTAGAAGCATCT 38990 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || |||| |||||| ||||| ||||| | || |||||| Sbjct 38991 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAAGGGATCCCTCCTGATCAA 39050 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTACA 29139 |||||| | |||||||| || |||||| ||||||| || | ||| | | ||||| | Sbjct 39051 CAAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGTCGCACACTTT--CTGATTATA 39108 Query 29140 ATATTCAGAAGGAATCTACTCTTCA 29164 ||||||| || ||||||||||| || Sbjct 39109 ATATTCAAAAAGAATCTACTCTCCA 39133 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || | || || || || ||||| |||| ||| || | Sbjct 39615 ATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTCGAAGTAGAAGCCTCT 39674 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || |||| |||||| |||||||||||| | || |||||| Sbjct 39675 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 39734 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 |||||||| |||||||| || ||||| | |||||| || | || | | ||||| | Sbjct 39735 CAAAGACTGATCTTTGCTGGAAAACAGTTAGAAGATGGTCGCACGCTTT--CAGATTATA 39792 Query 29140 ATATTCAGAAGGAATCTACTCTTCA 29164 ||||||| || |||||||| || || Sbjct 39793 ATATTCAAAAAGAATCTACCCTCCA 39817 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || |||| || | || || || || ||||| |||| ||| | | Sbjct 38702 AATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTCGAAGTAGAAGCATC 38761 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || ||| | | || |||| |||||| ||||| |||||| | || ||||| Sbjct 38762 TGATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAAGGTATTCCACCTGATCA 38821 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||||||||| |||||||| || ||||| | |||||| || | || | | ||||| Sbjct 38822 ACAAAGACTGATCTTTGCTGGAAAACAGTTAGAAGATGGTCGCACGCTTT--CAGATTAT 38879 Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164 |||||||| || |||||||| || || Sbjct 38880 AATATTCAAAAAGAATCTACCCTCCA 38905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427356605854205