Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09]
187,611 sequences; 596,278,454 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq5459 105 6e-18
seq4862 95.1 1e-14
>seq5459
Length=1306269
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
||||||||| || |||| ||| |||| || |||||||||||| ||| ||| | |
Sbjct 706330 AATGCAAATCTTTGTCAAGACACTGACAGGAAAAACCATTACCTTGGAAGTAGAAGCTTC 706271
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | || | ||| |||||| ||||| ||||| | ||| |||||
Sbjct 706270 TGATACAATAGAGAATGTGAAGGCAAAAATCCAAGATAAGGAAGGAATTCCCCCTGATCA 706211
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
||| | | |||||||| || ||||| ||||||||| | |||| || | ||||| ||
Sbjct 706210 GCAACGTTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGAGAACTTTGTCAGATTATAA 706151
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| |||||||| || ||||| ||| |||| || | | |||||||
Sbjct 706150 CATCCAGAAGGAGTCAACTCTCCACTTGGTACTAAGGCTCAGAGGAGG 706103
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
||||||||| || | |||||| |||| || |||||||| ||| ||| ||| | |
Sbjct 721310 AATGCAAATCTTTGTGAAAACACTGACAGGGAAAACCATCACCTTGGAAGTAGAAGCTTC 721251
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | || | || || || ||||| ||||| | || |||||
Sbjct 721250 TGACACAATAGAGAATGTGAAAGCTAAGATACAAGATAAGGAAGGAATCCCTCCTGATCA 721191
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|| | | |||||||| |||||||| || |||||| | ||| | ||||||||
Sbjct 721190 GCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACACTTTTGGATTACAA 721131
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||| ||||||||||| ||||| ||| |||||||| || | || |||||
Sbjct 721130 TATCCAGAAGGAATCCACTCTCCACCTGGTGTTAAGACTTCGTGGAGG 721083
>seq4862
Length=216935
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| |||| ||| | || || || || ||||| ||| ||| || |
Sbjct 39843 ATGCAAATTTTCGTCAAGACACTTACTGGAAAGACTATTACGCTGGAAGTAGAAGCCTCT 39902
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | || |||| |||||| |||||||||||| | || ||||||
Sbjct 39903 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 39962
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139
|||||||| |||||||| || |||||| | |||||| || | || | | || || |
Sbjct 39963 CAAAGACTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACGCTTT--CTGACTATA 40020
Query 29140 ATATTCAGAAGGAATCTACTCTTCA 29164
||||||| || |||||||| || ||
Sbjct 40021 ATATTCAAAAAGAATCTACCCTCCA 40045
Score = 93.3 bits (102), Expect = 4e-14
Identities = 162/234 (69%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 28957 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 29016
|||| ||||| || ||| | |||||| |||| |||||||| || ||| ||| ||
Sbjct 34367 TAAACATGCAGATCTTCGTAAAAACACTGACAGGCAAAACAATAACCCTCGAGGTTGAGG 34426
Query 29017 CCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 29076
| |||| || | | | |||| |||||| ||||| |||||| | || |
Sbjct 34427 CATCAGATACAATTGAAAACGTTAAAGCTAAAATTCAAGATAAGGAAGGTATCCCACCTG 34486
Query 29077 ATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGA 29134
||||||||||| | |||||||| || |||||| | |||||| || | || | ||||
Sbjct 34487 ATCAACAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACGCTTT--CCGA 34544
Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| |||||||| || |||||||| || || | || | ||| | ||||| ||
Sbjct 34545 CTATAATATTCAAAAAGAATCTACCCTCCATCTTGTACTCCGACTTCGAGGTGG 34598
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| || |||| || | || || ||||| || ||| ||| ||| | |
Sbjct 40983 ATGCAAATTTTTGTCAAGACTCTCACTGGGAAAACTATAACCCTGGAAGTTGAAGCATCG 41042
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | || |||| |||||| ||||| |||||| | || ||||||
Sbjct 41043 GACACAATTGAGAATGTTAAAGCTAAAATTCGTGATAAGGAAGGTATCCCACCTGATCAA 41102
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|||||||| |||||||| || |||||| |||||||| | || | | ||||| |||
Sbjct 41103 CAAAGACTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACGCTTTCTGATTATAAT 41162
Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164
|||||||| ||||| ||||| ||
Sbjct 41163 ATTCAGAAAGAATCAACTCTGCA 41185
Score = 89.7 bits (98), Expect = 4e-13
Identities = 144/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| |||| ||| | || || || || ||||| ||| ||| | |
Sbjct 38931 ATGCAAATTTTCGTCAAGACACTTACTGGAAAGACTATTACGCTGGAAGTAGAAGCATCT 38990
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | || |||| |||||| ||||| ||||| | || ||||||
Sbjct 38991 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAAGGGATCCCTCCTGATCAA 39050
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTACA 29139
|||||| | |||||||| || |||||| ||||||| || | ||| | | ||||| |
Sbjct 39051 CAAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGTCGCACACTTT--CTGATTATA 39108
Query 29140 ATATTCAGAAGGAATCTACTCTTCA 29164
||||||| || ||||||||||| ||
Sbjct 39109 ATATTCAAAAAGAATCTACTCTCCA 39133
Score = 89.7 bits (98), Expect = 4e-13
Identities = 144/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| || |||| || | || || || || ||||| |||| ||| || |
Sbjct 39615 ATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTCGAAGTAGAAGCCTCT 39674
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | || |||| |||||| |||||||||||| | || ||||||
Sbjct 39675 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 39734
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139
|||||||| |||||||| || ||||| | |||||| || | || | | ||||| |
Sbjct 39735 CAAAGACTGATCTTTGCTGGAAAACAGTTAGAAGATGGTCGCACGCTTT--CAGATTATA 39792
Query 29140 ATATTCAGAAGGAATCTACTCTTCA 29164
||||||| || |||||||| || ||
Sbjct 39793 ATATTCAAAAAGAATCTACCCTCCA 39817
Score = 82.4 bits (90), Expect = 7e-11
Identities = 143/206 (69%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
||||||||| || |||| || | || || || || ||||| |||| ||| | |
Sbjct 38702 AATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTCGAAGTAGAAGCATC 38761
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| ||| | | || |||| |||||| ||||| |||||| | || |||||
Sbjct 38762 TGATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAAGGTATTCCACCTGATCA 38821
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138
||||||||| |||||||| || ||||| | |||||| || | || | | |||||
Sbjct 38822 ACAAAGACTGATCTTTGCTGGAAAACAGTTAGAAGATGGTCGCACGCTTT--CAGATTAT 38879
Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164
|||||||| || |||||||| || ||
Sbjct 38880 AATATTCAAAAAGAATCTACCCTCCA 38905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427356605854205
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |