Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5459 100 3e-16 seq4862 93.3 4e-14 >seq5459 Length=1306269 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || ||||| || ||||| || |||||||||||| | || || ||||| | Sbjct 706102 AATGCAAATCTTTGTAAAGACCCTCACAGGGAAAACCATCACCTTGGAGGTAGAAGCTTC 706043 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | |||| ||| || | |||||||| || ||||| | ||||| Sbjct 706042 TGATACAATAGAGAATGTGAAGGCAAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCA 705983 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||||||| | || || | | || || || || || Sbjct 705982 GCAGCGCTTGATCTTTGCTGGCAAACAGTTAGAAGATGGAAGAACTCTTTCAGATTATAA 705923 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| | || || ||| | || ||| | | ||||| || Sbjct 705922 CATTCAGAAGGAGTCAACACTACATTTGGTATTGAGACTCAGGGGGGG 705875 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || ||||| || |||||||||||| | || || ||||| Sbjct 707017 AAACATGCAGATCTTCGTTAAGACCCTCACAGGAAAAACCATCACCTTGGAGGTAGAAGC 706958 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | | |||| ||| || | || || || || || ||| | || Sbjct 706957 TTCTGACACAATAGAGAATGTGAAGGCAAAGATCCAAGATAAGGAAGGAATTCCCCCTGA 706898 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||| | |||| || || ||||||||||| || | | ||||| || || Sbjct 706897 TCAGCAACGTTTGATCTTTGCTGGGAAACAGCTGGAAGATGGAAGAACCCTTTCAGATTA 706838 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||| | || || || Sbjct 706837 TAACATCCAGAAGGAGTCAACTCTCCA 706811 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || ||||| || |||||||| ||| | || || ||||| | Sbjct 706558 AATGCAAATCTTTGTCAAGACACTCACAGGAAAAACCATTACCTTGGAGGTAGAAGCTTC 706499 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| | || | ||||| | |||||||| || || || | ||||| Sbjct 706498 TGATACAATAGAAAATGTAAAAGCGAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCA 706439 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || |||||||| | || || | | | ||||| || || || Sbjct 706438 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACCCTTTCAGATTATAA 706379 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||||||||||| | || || ||| | || ||| Sbjct 706378 CATCCAGAAGGAGTCAACACTACATTTGGTATTG 706345 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || ||||| || || || || ||||||||||| | || || ||||| | Sbjct 706786 AATGCAAATCTTTGTAAAGACACTTACAGGAAAAACCATCACTTTGGAGGTAGAAGCTTC 706727 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||| ||| || | || || || || || ||| | || || Sbjct 706726 TGACACAATAGAGAATGTGAAGGCAAAGATCCAAGATAAGGAAGGAATTCCCCCTGATCA 706667 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || ||||||||||| || | | ||||| || || || Sbjct 706666 GCAACGTTTGATCTTTGCTGGGAAACAGCTGGAAGATGGAAGAACCCTTTCAGATTATAA 706607 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 706606 CATCCAGAAGGAGTCAACTCTCCA 706583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| || || || |||||||||||| | || || ||||| | Sbjct 721310 AATGCAAATCTTTGTGAAAACACTGACAGGGAAAACCATCACCTTGGAAGTAGAAGCTTC 721251 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | || | || || | || || || || ||||| | || || Sbjct 721250 TGACACAATAGAGAATGTGAAAGCTAAGATACAAGATAAGGAAGGAATCCCTCCTGATCA 721191 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||||||||| || || | | || || || ||||| Sbjct 721190 GCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACACTTTTGGATTACAA 721131 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 ||||||||||| |||| || || || ||||| Sbjct 721130 TATCCAGAAGGAATCCACTCTCCACCTGGTGTT 721098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || | || || ||||||||||| | || || ||||| Sbjct 721541 AAACATGCAGATCTTTGTTAAGACATTAACAGGAAAAACCATCACTTTAGAGGTTGAAGC 721482 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | ||| | || | ||||| | |||||||| || ||||| | || Sbjct 721481 TTCTGACACAATAGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCTGA 721422 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||| | |||| ||| ||||||||| | || || | | ||||| || || Sbjct 721421 TCAGCAACGTTTGATCTTCGCTGGCAAACAGTTAGAAGATGGAAGAACCCTTTCAGATTA 721362 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| |||||| | || || || | || ||| | | ||||| || Sbjct 721361 TAACATCCAAAAGGAGTCAACTCTCCACTTGGTATTGAGACTCAGGGGAGG 721311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || || || || |||||||| ||| | || || ||||| | Sbjct 706330 AATGCAAATCTTTGTCAAGACACTGACAGGAAAAACCATTACCTTGGAAGTAGAAGCTTC 706271 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | |||| |||||| | || || || || || ||| | || || Sbjct 706270 TGATACAATAGAGAATGTGAAGGCAAAAATCCAAGATAAGGAAGGAATTCCCCCTGATCA 706211 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || ||||||||||| || | | | || | || || || Sbjct 706210 GCAACGTTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGAGAACTTTGTCAGATTATAA 706151 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 706150 CATCCAGAAGGAGTCAACTCTCCA 706127 >seq4862 Length=216935 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || ||||| || ||| | || || ||||| | Sbjct 39387 ATGCAAATTTTTGTCAAGACTCTCACTGGAAAAACTATAACCCTGGAAGTTGAAGCATCG 39446 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | ||| |||| ||| ||| || || || ||||| | || || Sbjct 39447 GACACAATTGAAAACGTTAAAGCTAAAA-TTCGCGATAAGGAAGGTATCCCACCTGATCA 39505 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | || || ||||| | || |||| || || || | |||||| || Sbjct 39506 ACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTCGTACACTGACCGACTATAA 39565 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || ||||| | ||||||||||| || Sbjct 39566 TATTCAAAAGGAATCTACGCTGCATCTTGT 39595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514010940133360