Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5459 109 5e-19 seq4862 107 2e-18 >seq5459 Length=1306269 Score = 109 bits (120), Expect = 5e-19 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | ||| ||||||| ||||| || || || || || || |||||||| Sbjct 721081 TACCTCCACGAAGTCTTAACACCAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCCA 721140 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | |||| | | ||| || |||||||| ||||| |||| | |||||||||||| || Sbjct 721141 --AAAGTGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCAGG 721198 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCT 118686 ||| || || ||||| ||| || || ||| || | || | ||||| | ||| | Sbjct 721199 AGGGATTCCTTCCTTATCTTGTATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCT-T 721257 Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || | ||| | ||||| || ||||| ||||| ||||| || ||||| Sbjct 721258 CTACTTCCAAGGTGATGGTTTTCCCTGTCAGTGTTTTCACAAAGATTTGCAT 721309 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | |||||| ||||| |||| ||| ||||| || |||||||| ||||| | Sbjct 710560 CCTCCTCTGAGTCTCAATACCAAATGGAGTGTTGACTCCTTCTGAATGTTATAATC--TG 710617 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | | | ||| || |||||||| ||||| |||| | || |||||||| || Sbjct 710618 AAAGGGTTCTTCCATCTTCTAGCTGTTTCCCAGCAAAGATCAATCGTTGCTGATCAGGGA 710677 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCG 118688 | || || || || ||| || ||| || || | || | || || | ||| || Sbjct 710678 GAATTCCTTCTTTATCTTGGATCTTTGCCTTCACATTCTCTATTGTATCAGAAGCT-TCT 710736 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| | ||| | ||||| || || || || || || |||||||||||| Sbjct 710737 ACCTCCAAGGTGATAGTTTTCCCTGTGAGGGTCTTAACGAAAATCTGCATG 710787 >seq4862 Length=216935 Score = 107 bits (118), Expect = 2e-18 Identities = 152/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||||| ||||||||||| || || ||| | || || ||| || | Sbjct 34579 CAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCGGAAAGCGTACGACCATCTTCTA 34520 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||| ||||| |||| | | || ||||| || || || || ||||| ||| || Sbjct 34519 ATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAA 34460 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| |||||| | ||| | || || | ||| ||| ||||||| ||| | |||||| Sbjct 34459 TTTTAGCTTTAACGTTTTCAATTGTATCTGATGC-CTCAACCTCGAGGGTTATTGTTTTG 34401 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| |||||||| || ||||||||| Sbjct 34400 CCTGTCAGTGTTTTTACGAAGATCTGCATG 34371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||||| ||||||||||| || ||||| | ||||| ||| || | Sbjct 38910 CAAGATGGAGGGTAGATTCTTTTTGAATATTATAATCTGAAAGCGTGCGACCATCTTCTA 38851 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||||||||||| |||| || | || ||||| || || || || ||||| ||| || Sbjct 38850 ACTGTTTTCCAGCAAAGATCAGTCTTTGTTGATCAGGTGGAATACCTTCCTTATCTTGAA 38791 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| |||||| | ||| | || || | |||| || || |||| || | || || Sbjct 38790 TTTTGGCTTTAACATTTTCAATCGTATCAGATGCT-TCTACTTCGAGCGTAATAGTCTTT 38732 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| ||||| Sbjct 38731 CCAGTAAGGGTCTTGACAAAAATTTGCAT 38703 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || |||||||| || || ||| ||| || || || || | ||||||||| Sbjct 39583 GTAGATTCCTTTTGAATATTATAGTCGGTCAGTGTACGACCGTCTTCTAATTGTTTTCCA 39524 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | | || ||||| || || || || ||||| || |||||| |||| Sbjct 39523 GCAAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCCTTATCGCGAATTTTAGCTTTA 39464 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | ||||||| |||| || || || | ||| | ||||| || || ||||| Sbjct 39463 ACGTTTTCAATTGTGTCCGATGCT-TCAACTTCCAGGGTTATAGTTTTTCCAGTGAGAGT 39405 Query 118721 TTTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 39404 CTTGACAAAAATTTGCAT 39387 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||||| ||||||||||| || ||||| | ||||| ||| || | Sbjct 39822 CAAGATGGAGGGTAGATTCTTTTTGAATATTATAATCTGAAAGCGTGCGACCATCTTCTA 39763 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||||||||||| |||| || | || ||||| || || || || || || ||| || Sbjct 39762 ACTGTTTTCCAGCAAAGATCAGTCTTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAA 39703 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| |||||| | ||| | || || | | || || |||| || | || || | Sbjct 39702 TTTTGGCTTTAACATTTTCAATCGTATCAGAGGCTTCTACTTCGAGCGTAATAGTCTTTC 39643 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || |||||||| ||||| Sbjct 39642 CAGTAAGGGTCTTGACAAAAATTTGCAT 39615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||||| ||||||||||| || ||||| | ||||| ||| || | Sbjct 40506 CAAGATGGAGGGTAGATTCTTTTTGAATATTATAATCAGAAAGCGTGCGACCATCTTCTA 40447 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| || || | || | | ||||||||| || || || || ||||| ||| || Sbjct 40446 GCTGTTTACCGGCAAATATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTATCTTGAA 40387 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| |||||| | ||| | || || | | || || |||| || | || || | Sbjct 40386 TTTTGGCTTTAACATTTTCAATCGTATCAGAGGCTTCTACTTCGAGCGTAATAGTCTTTC 40327 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || |||||||| ||||| Sbjct 40326 CAGTAAGGGTCTTGACAAAAATTTGCAT 40299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| ||||| || ||||| | || || ||| || | ||||||||| Sbjct 41179 GTTGATTCTTTCTGAATATTATAATCAGAAAGCGTACGGCCATCTTCCAATTGTTTTCCA 41120 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | || ||||| || || || || ||||| || |||||| |||| Sbjct 41119 GCAAAGATCAGTCTTTGTTGATCAGGTGGGATACCTTCCTTATCACGAATTTTAGCTTTA 41060 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | ||||||| |||| || || || | ||| | ||||| || || ||||| Sbjct 41059 ACATTCTCAATTGTGTCCGATGCT-TCAACTTCCAGGGTTATAGTTTTCCCAGTGAGAGT 41001 Query 118721 TTTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 41000 CTTGACAAAAATTTGCAT 40983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432838442858812