Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09]
187,611 sequences; 596,278,454 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq635 138 2e-27
seq2060 118 2e-21
>seq635
Length=2663540
Score = 138 bits (152), Expect = 2e-27
Identities = 173/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 189395 AGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGG 189454
||||| ||||||||||| | || || || ||||| | |||||||||||| | |||||
Sbjct 1896420 AGAAAATATATATATTCTTTAAATCACCTGGAAAATTCTGAAACTCATGATGATTTATGG 1896361
Query 189455 AACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAT 189514
|| || | |||| || ||||||| | ||||||||||||| | | ||||||||||||
Sbjct 1896360 AATGCATGTCAAAATCAAATGGTGATAATAGGAAAAATGCATGGATACTTACGAATGTAT 1896301
Query 189515 TGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTT-GAGTTATAGTAT 189573
||||| || || || | ||||||||| ||||||||| ||||| || | ||
Sbjct 1896300 TGGGCAAAAAAATTATTAGAATGGACTGAAACACCTGAGATAGCTTTAGAATGGGCAAAT 1896241
Query 189574 CTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 189628
||||| || || ||||| ||||||| |||||||| || |||||||||
Sbjct 1896240 -TATTTAAATAATAAGTATAGTATAGACGGTTGTGATCCTAATGGTTACGTAGGT 1896187
Score = 86.0 bits (94), Expect = 1e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 189624 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATAT 189683
|||| || ||||||||||| || || | || ||| | |||| ||||||| ||||
Sbjct 1896117 TAGGCTGCATGTGGTCTATCTGTGGTGTTCATGATCATGGTTGGACAGAAAGAAATATAT 1896058
Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTAT 189743
||||||| ||||||||||||||||| || | | ||| |||||| ||||||| | ||
Sbjct 1896057 TTGGAAAAATAAGATATATGAATTACGAAGGATGTAAACGAAAATTTAATGTTGCCGAAT 1895998
Query 189744 TT 189745
||
Sbjct 1895997 TT 1895996
>seq2060
Length=769788
Score = 118 bits (130), Expect = 2e-21
Identities = 168/234 (72%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 135601 GATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAACTT 135660
|||| || || ||| || | ||| || | | | ||||| || || ||||| || ||
Sbjct 618314 GATACAGTAGAATGGGCTGCTTGGCAAGATAGAGGTGATCCAGTGTTACATATTGAT-TT 618372
Query 135661 AG-GAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAAT 135719
|| || |||||| ||| | ||| | || || || ||| || ||||| | | ||||||
Sbjct 618373 AGTGAAATGGGCAGATTTATTTTTAATTGCTCCATTAGATGCTAATACTCTTGGAAAAAT 618432
Query 135720 AGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAA 135779
||| | ||||||||||||||| || | || | | ||| | | |||||||| | ||
Sbjct 618433 AGCCAGCGGTATATGCGATAATATATTAACTTGTGTTGCACGTGCCTGGGACCCTTTGAA 618492
Query 135780 ACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTAC 135833
|| || ||||| |||||||| |||||||| ||||||||||||||| ||||
Sbjct 618493 GCCCCTAATTTTTTGTCCTGCCATGAATACAAAAATGTGGGAACATCCTGTTAC 618546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921031776564440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |