Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq635 138 2e-27 seq2060 118 2e-21 >seq635 Length=2663540 Score = 138 bits (152), Expect = 2e-27 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 189395 AGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGG 189454 ||||| ||||||||||| | || || || ||||| | |||||||||||| | ||||| Sbjct 1896420 AGAAAATATATATATTCTTTAAATCACCTGGAAAATTCTGAAACTCATGATGATTTATGG 1896361 Query 189455 AACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAT 189514 || || | |||| || ||||||| | ||||||||||||| | | |||||||||||| Sbjct 1896360 AATGCATGTCAAAATCAAATGGTGATAATAGGAAAAATGCATGGATACTTACGAATGTAT 1896301 Query 189515 TGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTT-GAGTTATAGTAT 189573 ||||| || || || | ||||||||| ||||||||| ||||| || | || Sbjct 1896300 TGGGCAAAAAAATTATTAGAATGGACTGAAACACCTGAGATAGCTTTAGAATGGGCAAAT 1896241 Query 189574 CTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 189628 ||||| || || ||||| ||||||| |||||||| || ||||||||| Sbjct 1896240 -TATTTAAATAATAAGTATAGTATAGACGGTTGTGATCCTAATGGTTACGTAGGT 1896187 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 189624 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATAT 189683 |||| || ||||||||||| || || | || ||| | |||| ||||||| |||| Sbjct 1896117 TAGGCTGCATGTGGTCTATCTGTGGTGTTCATGATCATGGTTGGACAGAAAGAAATATAT 1896058 Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTAT 189743 ||||||| ||||||||||||||||| || | | ||| |||||| ||||||| | || Sbjct 1896057 TTGGAAAAATAAGATATATGAATTACGAAGGATGTAAACGAAAATTTAATGTTGCCGAAT 1895998 Query 189744 TT 189745 || Sbjct 1895997 TT 1895996 >seq2060 Length=769788 Score = 118 bits (130), Expect = 2e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 135601 GATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAACTT 135660 |||| || || ||| || | ||| || | | | ||||| || || ||||| || || Sbjct 618314 GATACAGTAGAATGGGCTGCTTGGCAAGATAGAGGTGATCCAGTGTTACATATTGAT-TT 618372 Query 135661 AG-GAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAAT 135719 || || |||||| ||| | ||| | || || || ||| || ||||| | | |||||| Sbjct 618373 AGTGAAATGGGCAGATTTATTTTTAATTGCTCCATTAGATGCTAATACTCTTGGAAAAAT 618432 Query 135720 AGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAA 135779 ||| | ||||||||||||||| || | || | | ||| | | |||||||| | || Sbjct 618433 AGCCAGCGGTATATGCGATAATATATTAACTTGTGTTGCACGTGCCTGGGACCCTTTGAA 618492 Query 135780 ACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTAC 135833 || || ||||| |||||||| |||||||| ||||||||||||||| |||| Sbjct 618493 GCCCCTAATTTTTTGTCCTGCCATGAATACAAAAATGTGGGAACATCCTGTTAC 618546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921031776564440