Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2849 111 2e-19 seq10217 109 6e-19 seq1421 102 9e-17 seq1099 102 9e-17 seq16196 100 3e-16 seq968 100 3e-16 seq396 100 3e-16 seq5459 93.3 5e-14 seq4862 82.4 9e-11 >seq2849 Length=1674049 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| ||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 7276 AAATATTGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 7335 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 7336 TGACCACTATACTACCGAGGA 7356 >seq10217 Length=79343 Score = 109 bits (120), Expect = 6e-19 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 60057 AAAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| | ||||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 56334 AAAAATATAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 56393 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 ||| |||||||||||||||||||| Sbjct 56394 ACTTACCACTATACTACCGAGGAT 56417 >seq1421 Length=1888048 Score = 102 bits (112), Expect = 9e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||| ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 973170 ATTCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAAC 973111 Query 60121 CACTATACTACCGAGGATT 60139 |||||||||| |||||||| Sbjct 973110 CACTATACTAACGAGGATT 973092 >seq1099 Length=1831544 Score = 102 bits (112), Expect = 9e-17 Identities = 73/83 (88%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 60057 AAAAAT--TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| ||||||| || | ||||||||||||| ||||||||||||||||||||| || Sbjct 1672653 AAAAATAATTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 1672594 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| |||||||||||| |||||| Sbjct 1672593 ACTAACCACTATACTAACGAGGA 1672571 >seq16196 Length=334733 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 82776 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 82835 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 82836 ATACTAACGAGGATT 82850 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 82197 ATTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAAC 82256 Query 60121 CACT 60124 |||| Sbjct 82257 CACT 82260 >seq968 Length=1364020 Score = 100 bits (110), Expect = 3e-16 Identities = 78/92 (85%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| || |||||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 405655 AAATATATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGGTAC 405714 Query 60117 TCACCACTATACTACCGAGGATTGAATATATA 60148 | |||||||||||| ||||||| ||| |||| Sbjct 405715 TAACCACTATACTATCGAGGAT--AATTTATA 405744 >seq396 Length=2168952 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1069382 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1069441 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 1069442 ATACTAACGAGGATT 1069456 >seq5459 Length=1306269 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| |||||||| | ||| |||||| ||||| || ||||| | ||||| | | || Sbjct 705889 CAATACCAAATGTAGTGTTGACTCCTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 705948 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 |||| ||| || ||||| || || | ||||||||||| | || | | || ||||| Sbjct 705949 TTCTAACTGTTTGCCAGCAAAGATCAAGCGCTGCTGGTCTGGAGGGATTCCTTCTTTGTC 706008 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 ||| ||| || | || | | || || | ||| || || | |||||||| Sbjct 706009 TTGGATCTTTGCCTTCACATTCTCTATTGTATCAGAAGCTTCTACCTCCAAGGTGATGGT 706068 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| || || || ||||||||||||||||||||| Sbjct 706069 TTTCCCTGTGAGGGTCTTTACAAAGATTTGCATT 706102 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | | ||| || ||||| | ||| |||||| ||||| || |||| | Sbjct 709875 TCCTCCTCTGAGTCTCAATACTAAATGTATTGTTGACTCCTTCTGAATGTTAGAATCTGA 709934 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| | | | || |||| || || ||||| || || | ||||||||||| || | Sbjct 709935 AAGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGCAGA 709994 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| ||||| |||||| ||| | || | | || || | ||| || Sbjct 709995 GATTCCCTCTTTGTCTTGGATTTTAGCTTTTACATTCTCTATTGTATCAGAAGCTTCTAC 710054 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||||| || || | || ||||| ||||||||||||||| Sbjct 710055 CTCCAAGGTGATGGTCTTTCCTGACAGTGTCTTGACAAAGATTTGCATT 710103 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42972 AACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCA 43031 ||||| ||||| | ||| |||||||||||| || || || | ||||| | | || Sbjct 709435 AACACTAAATGGAGTGTTGACTCCTTTTGAATGTTATAGTCTGAAAGAGTTCTACCATCT 709494 Query 43032 TCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 |||| ||| || ||||| || || | |||||| |||| | || | || |||||| Sbjct 709495 TCTAACTGTTTTCCAGCAAAGATCAAACGCTGCAGGTCAGGTGGGATTTCTTCTTTGTCC 709554 Query 43092 ATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151 |||||| ||| | || | | || || | || || || | |||||||| Sbjct 709555 TGGATTTTAGCTTTTAAATTCTCTATAGTATCAGAAGCATCTACCTCCAAAATGATGGTT 709614 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || || || ||||||||||||||||||||| Sbjct 709615 TTTCCAGTCAGTGTCTTTACAAAGATTTGCATT 709647 >seq4862 Length=216935 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||||||||| ||||||| || || || | || |||||||| ||||| || ||| Sbjct 40489 TCTTTTTGAATATTATAATCAGAAAGCGTGCGACCATCTTCTAGCTGTTTACCGGCAAAT 40430 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | || |||||| || | || | | ||||| | | ||| |||| | ||| | | Sbjct 40429 ATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTAT-CTTGAATTTTGGCTTTAACATT 40371 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||| || | ||| || |||| ||| || || || || || || ||||| || Sbjct 40370 TTCAATCGTATCAGAGGCTTCTACTTCGAGCGTAATAGTCTTTCCAGTAAGGGTCTTGAC 40311 Query 43172 AAAGATTTGCAT 43183 ||| |||||||| Sbjct 40310 AAAAATTTGCAT 40299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570476609103080