Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq967 111 1e-19 >seq967 Length=1612715 Score = 111 bits (122), Expect = 1e-19 Identities = 153/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 16487 TTTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 ||||||| || |||| |||||| || || || | |||| ||||||||||||||| | | Sbjct 653259 TTTTCTTAGC-ATCTGTAATATATGTGTCAATCAATAAAGAATACATTTCTGAATGTACA 653201 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA-GA 16605 || ||||| || | ||||| |||||||| || | || || | || |||||||| || Sbjct 653200 TTTTCCATGGCAACTTGAAAGCCATAAAAACAACGTGCCTCTGTTACCTGTACTTCTTGA 653141 Query 16606 GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 |||| | || | | | ||||| |||||||||||||| ||| |||||||| || | Sbjct 653140 CTAAATCGTT-CAACAAGATTTTCATTAACTATTCCATCAGAAGCAGCAAAAAATGCTAA 653082 Query 16666 TATGTGTTTAATAAAAtttttttCGTTATC 16695 || || ||||||| ||| || || || Sbjct 653081 TACATGAGATATAAAATGTTTCTCATTGTC 653052 Score = 102 bits (112), Expect = 8e-17 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 ||||||||| ||||||||||| |||| ||| || | ||| |||||||| ||||| || Sbjct 653531 AAATGTAAGTCCTGGCATTAGACCTCTTTTCTTTAGCCAGAATATAGCAGCAAAACTGCC 653472 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCA 16390 | |||||| |||||||| || || ||||||||||||| |||||| Sbjct 653471 ACTAAAGAAAATACCTTCTACCGCAGCAAATGCAACCACACGCTCA 653426 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/218 (70%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 16046 CATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 || || ||||| | | |||||||| || |||||||| ||||| || ||| | | Sbjct 653881 CAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATTGGCACATAAGTTTG 653822 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 |||||||| ||||| | || |||||| | |||||||||||||| | || ||| || || Sbjct 653821 CAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATTCTTGTTCAATTTTG 653762 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAG--GGTTT---AATAA-G 16219 || || || | || || | | ||| | || ||||| ||||| |||| | Sbjct 653761 ACAGCATCTTTAATAATTGATGTGACT---CGAT---CCGGAGGTGGTTTTTGTATAATG 653708 Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCC 16257 ||||| ||||||| ||| || ||||| ||||| || || Sbjct 653707 TGTTTGAACATTAAACATGCGAAATCGCAATGTAACCC 653670 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || | ||| |||| ||||| || || ||||| |||||||| ||||||| Sbjct 654057 TTTTGATACTCTCCTACTTTCTTCTCAAAAAAGTTCGTTTTACCTTCTAAAGAAATATGC 653998 Query 16004 TCCATAAAATCAAAAGGATTTT 16025 |||||||||||||| ||||||| Sbjct 653997 TCCATAAAATCAAATGGATTTT 653976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461427345764600