Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq4862 111 1e-19 seq5459 102 6e-17 >seq4862 Length=216935 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||||| | || || || |||||||||||||| || ||||||| Sbjct 34598 CCACCTCGAAGTCGGAGTACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCGGAA 34539 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || ||| |||| | |||||||||||| || Sbjct 34538 AGCGTACGACCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGG 34479 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| | || || || | | ||| || || | ||| Sbjct 34478 ATACCTTCCTTATCTTGAATTT-TAGCTTTAACGTTTTCAATTGTATCTGATGCCTCAAC 34420 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 || | ||| || ||||||| |||| ||||||||| || || ||||| |||| Sbjct 34419 CTCGAGGGTTATTGTTTTGCCTGTCAGTGTTTTTACGAAGATCTGCATGTTTA 34367 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||||| | || || || ||||| |||||||| || ||||||| | Sbjct 39613 CCACCTCGAAGTCGGAGTACAAGATGCAGCGTAGATTCCTTTTGAATATTATAGTCGGTC 39554 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||||| |||||||| || ||| | || | |||||||||||| || Sbjct 39553 AGTGTACGACCGTCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTGGG 39494 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| ||||| | || || || | | ||| ||||| | || Sbjct 39493 ATACCTTCCTTATCGCGAATTT-TAGCTTTAACGTTTTCAATTGTGTCCGATGCTTCAAC 39435 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| || |||| || || | || || |||||||||||||| Sbjct 39434 TTCCAGGGTTATAGTTTTTCCAGTGAGAGTCTTGACAAAAATTTGCAT 39387 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| |||||| | || || || |||||||||||||| || ||||| | | || | Sbjct 40060 AGTCGAAGTACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCAGAAAGCGTACGA 40001 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| |||||||| || ||| |||| ||||||||||||||| || | ||||| Sbjct 40000 CCATCTTCTAATTGTTTTCCAGCAAAGATCAGTCTTTGTTGATCCGGTGGAATACCTTCT 39941 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| ||||| | || || || | | ||| || ||| || || ||| | || Sbjct 39940 TTATCTTGAATTT-TGGCTTTAACATTTTCAATCGTATCAGAGGCTTCTACTTCCAGCGT 39882 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || || | ||| || || ||||||||||| Sbjct 39881 AATAGTCTTTCCAGTAAGTGTCTTGACGAAAATTTGCAT 39843 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| |||||| | || || ||||||||||| ||||| || || || | Sbjct 41209 CCACCACGGAGTCGAAGTACAAGATGCAGAGTTGATTCTTTCTGAATATTATAATCAGAA 41150 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||||||||| || ||| |||| |||||||||||||| || Sbjct 41149 AGCGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAGTCTTTGTTGATCAGGTGGG 41090 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| | || || || | ||| ||||| | || Sbjct 41089 ATACCTTCCTTATCACGAATTT-TAGCTTTAACATTCTCAATTGTGTCCGATGCTTCAAC 41031 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| || |||| || || | || || |||||||||||||| Sbjct 41030 TTCCAGGGTTATAGTTTTCCCAGTGAGAGTCTTGACAAAAATTTGCAT 40983 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| ||||| |||| ||||| | || || || |||||||||||||| || ||||||| Sbjct 38702 TCCACCCCGAAGTCGGAGTACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCGGA 38643 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || |||||| |||||||| || ||| | || | ||||||||| || || Sbjct 38642 AAGCGTACGACCATCTTCTAATTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCAGGTGG 38583 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| |||||| | | | || ||| | || Sbjct 38582 GATCCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCGATTGTATCAGAAGCTTCAAC 38523 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| || |||| || || | || || |||||||||||||| Sbjct 38522 TTCCAAGGTTATAGTTTTCCCAGTGAGAGTCTTCACAAAAATTTGCAT 38475 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| ||||| | || || || |||||||||||||| || ||||||| | || | Sbjct 40288 AGTCGGAGTACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCGGAAAGCGTACGA 40229 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 |||||||| |||||||| || ||| |||| | |||||| ||||| || | |||||| Sbjct 40228 CAATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGCTGATCAGGTGGAATACCTTCC 40169 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| ||||| | || || || | | ||| || ||| || || ||| | || Sbjct 40168 TTATCTTGAATTT-TGGCTTTAACATTTTCAATTGTATCAGAGGCTTCTACTTCTAGCGT 40110 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || || || | || || ||||||||||||||| Sbjct 40109 AATAGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 40070 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||||| | ||||| || |||||||||||||| || || || | Sbjct 39385 CCACCTCGAAGTCGGAGTACAACATGAAGCGTAGATTCTTTTTGAATATTATAATCAGAA 39326 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | || ||||||||||||||| || ||| |||| | |||||||| ||| || Sbjct 39325 AGCGTGTGACCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGTTCATCAGGTGGG 39266 Query 18219 ACGCCTTCCTTAT 18231 | |||||||||| Sbjct 39265 ATCCCTTCCTTAT 39253 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||||| | || || || |||||||||||||| || || || | Sbjct 40981 CCACCTCGAAGTCGGAGTACAACATGGAGCGTAGATTCTTTTTGAATATTATAATCAGAA 40922 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | || ||||||||||||||| || ||| |||| | |||||||||||| || Sbjct 40921 AGCGTGTGACCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGTTGATCAGGTGGG 40862 Query 18219 ACGCCTTCCTTAT 18231 | |||||||||| Sbjct 40861 ATCCCTTCCTTAT 40849 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| ||| || | || || || |||||||||||||| || || || | | ||| | Sbjct 39148 AGTCGAAGAACAAGATGGAGAGTAGATTCTTTTTGAATATTATAATCAGAAAGTGTGCGA 39089 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||||||||| || ||| |||| | |||||||||||| || | |||||| Sbjct 39088 CCGTCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGTTGATCAGGAGGGATCCCTTCC 39029 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| ||||| | || || || | | ||| || ||| | || ||| | || Sbjct 39028 TTATCTTGAATTT-TGGCTTTAACATTTTCAATCGTATCAGATGCTTCTACTTCCAGCGT 38970 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || || | ||| || || ||||||||||| Sbjct 38969 AATAGTCTTTCCAGTAAGTGTCTTGACGAAAATTTGCAT 38931 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| ||||| | || || || |||||||||||||| || || || | | || | Sbjct 39832 AGTCGGAGTACAAGATGGAGGGTAGATTCTTTTTGAATATTATAATCTGAAAGCGTGCGA 39773 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| || ||||| || ||| |||| ||||||||||||||| || | ||||| Sbjct 39772 CCATCTTCTAACTGTTTTCCAGCAAAGATCAGTCTTTGTTGATCCGGTGGAATACCTTCT 39713 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| ||||| | || || || | | ||| || ||| || || ||| | || Sbjct 39712 TTATCTTGAATTT-TGGCTTTAACATTTTCAATCGTATCAGAGGCTTCTACTTCGAGCGT 39654 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || || | || || |||||||||||||| Sbjct 39653 AATAGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCAT 39615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| ||||| | || || || |||||||||||||| || || || | | || | Sbjct 38920 AGTCGGAGTACAAGATGGAGGGTAGATTCTTTTTGAATATTATAATCTGAAAGCGTGCGA 38861 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| || ||||| || ||| |||| |||||||||||||| || | |||||| Sbjct 38860 CCATCTTCTAACTGTTTTCCAGCAAAGATCAGTCTTTGTTGATCAGGTGGAATACCTTCC 38801 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| ||||| | || || || | | ||| || ||| | || ||| | || Sbjct 38800 TTATCTTGAATTT-TGGCTTTAACATTTTCAATCGTATCAGATGCTTCTACTTCGAGCGT 38742 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || || || | || || ||||||||||||||| Sbjct 38741 AATAGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 38702 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| ||| || | || || || |||||||||||||| || ||||||| | || | Sbjct 40744 AGTCGAAGAACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCGGAAAGCGTACGA 40685 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| |||||||| || ||| | || | |||||||||||| || | |||||| Sbjct 40684 CCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCC 40625 Query 18228 TTATCGGCAATTT 18240 ||||| ||||| Sbjct 40624 TTATCTTGAATTT 40612 >seq5459 Length=1306269 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| ||||| ||||||| |||||| ||||| || || || ||||| || || | Sbjct 705646 TCCTCCCCTGAGTCTTAGTACCAAGTGAAGAGTTGACTCCTTCTGGATGTTATAATCTGA 705705 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||| ||||| || ||| |||| | | ||| ||||| ||| Sbjct 705706 TAAAGTTCTTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAAACGTTGCTGATCAGGGGG 705765 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| || | | ||| || | | | |||||| | || Sbjct 705766 AATTCCTTCCTTATCTTGGATCTTTGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTAC 705825 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||| ||| | || || |||| |||||| ||||| ||||||||| Sbjct 705826 TTCCAAGGTAATGGTCTTTCCTGTCAGTGTTTTGACAAAGATTTGCATT 705874 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || || ||||||| ||| || ||||| || || || ||||| || || | Sbjct 706102 TCCTCCTCTGAGCCTTAGTACCAAGTGGAGAGTTGACTCCTTCTGGATGTTATAATCTGA 706161 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | | |||||||| ||||| || ||| |||| | | ||| ||||| ||| Sbjct 706162 CAAAGTTCTCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAAACGTTGCTGATCAGGGGG 706221 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| |||| | ||| || | | | || ||| | || Sbjct 706222 AATTCCTTCCTTATCTTGGATTTTTGCCTTCACATTCTCTATTGTATCAGAAGCTTCTAC 706281 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||| ||| |||| || |||| ||| || ||||| ||||||||| Sbjct 706282 TTCCAAGGTAATGGTTTTTCCTGTCAGTGTCTTGACAAAGATTTGCATT 706330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378476626506195