Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5123 98.7 2e-15 seq731 86.0 1e-11 seq967 84.2 4e-11 >seq5123 Length=351926 Score = 98.7 bits (108), Expect = 2e-15 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 35480 GGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGG 35539 ||||||||||||||| | | |||||| || | | ||| |||| ||||| Sbjct 332491 GGTATTGATCAATTGAAGGACGTCATAAAGAAACTACAATATTCTCCCAATGACAGAAGA 332550 Query 35540 ATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCAC 35599 || || ||||| ||||||||||| ||| || | ||||| || ||||| || ||| Sbjct 332551 ATTATAATGACTGCATGGAATCCAGCTGATATTTCACAAATGGCCCTACCTCCCTGTCAC 332610 Query 35600 ATGAC-TGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAG 35658 || | || ||||||||||||| | || ||| || || || || | ||||| |||| Sbjct 332611 -TGTCTTGTTCAATTTTATGTGAATGATAAAGAGTTATCATGTCAACTTTATCAAAGAAG 332669 Query 35659 CGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCT 35718 | |||| | || | || || || || ||||||||||| || | ||| || ||||| | Sbjct 332670 TGCAGATATGGGTCTTGGAGTACCATTTAATATTGCATCTTATTGTCTACTAACTCACAT 332729 Query 35719 GATGGC 35724 | |||| Sbjct 332730 GCTGGC 332735 Score = 86.0 bits (94), Expect = 1e-11 Identities = 168/241 (70%), Gaps = 12/241 (5%) Strand=Plus/Plus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308 || |||||||| |||||||||||| | | ||||| || ||||| ||| | || ||| Sbjct 332180 TTTTGGAGAGGCGTTGTGGAAGAATTGTTATGGTTTATTAGGGGATCAACAAATGCAAAA 332239 Query 35309 GAATTGGCCAAG--AAGAAGATA--CACATCTGGAACGCTAATGGGTCGCGGGAATTTTT 35364 || || ||| || ||| || ||||| ||| | | || | || || | ||||| Sbjct 332240 GAGTT----AAGTGAAAAAGGTATTCACATTTGGGATGAAAACAGCTCACGTGTGTTTTT 332295 Query 35365 GGACAGTAGAGGGTTATAC-GATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCC 35423 || | || || ||| ||||| | ||| |||||||| || || || || ||||| | Sbjct 332296 AGATTCTTCTGGTTT-TACAGATAGGGAAGAAGGAGATTTAGGGCCTGTTTATGGATTTC 332354 Query 35424 AATGGCGTCATTTTGGTGCTGAATATGATACCTGTTC-TTCCGATTATACTGGAAAGGGT 35482 ||||| | ||||||||||| ||||| ||| | | | | | ||||||| ||| | ||| Sbjct 332355 AATGGAGACATTTTGGTGCAAAATAT-ATAGATATGCATGCAGATTATAATGGGCAAGGT 332413 Query 35483 A 35483 | Sbjct 332414 A 332414 >seq731 Length=568950 Score = 86.0 bits (94), Expect = 1e-11 Identities = 125/175 (71%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 94165 TTCACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCA 94224 || |||||| | || || || || || || ||||||||||||||| |||| | | | | Sbjct 415323 TTTACAAACATATTTACAGCAATTGAGGCTAAATTGCACACTGCAATTTCATTTGGACTA 415382 Query 94225 CTGTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGG 94284 |||| ||||||||||| |||||||| | ||||||| | || | ||||| || Sbjct 415383 GAATACTCTACAATTTCAGTACACAAATTACTACACTTGATTGTTCCCAAATTTTTATGA 415442 Query 94285 TTAGACTTTCTATTG--ATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTC 94337 || || || | |||| ||| ||| ||| | || |||||| ||||| ||||| Sbjct 415443 TTTGATTTACGATTGCAATG--ATCTTTATAAAGCATATAAGGAGTTCCTGTTTC 415495 >seq967 Length=1612715 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 102128 GAAGCCGTCCGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGA 102187 || || ||| |||||||||||||||| | |||| | |||||||| || | | || Sbjct 653754 GATGCTGTCAAAATTGAACAAGAATTTTTAACAGAAGCTTTGCCTGTTGAAATGATAGGC 653813 Query 102188 ATGAACTGCAAGTTGATGAGCCAGTACATTGAATTTGTGGCAGATA 102233 ||||||||||| | ||| |||| || ||||||||||| ||||||| Sbjct 653814 ATGAACTGCAAACTTATGTGCCAATATATTGAATTTGTTGCAGATA 653859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987205271688505