Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09]
187,611 sequences; 596,278,454 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq731 179 5e-40
seq967 141 1e-28
>seq731
Length=568950
Score = 179 bits (198), Expect = 5e-40
Identities = 208/276 (75%), Gaps = 6/276 (2%)
Strand=Plus/Plus
Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353
||| || || ||| || | | ||||| |||||| || || |||||||| | |||||
Sbjct 414486 CTGGATAGAACCATTATTTGCTATAATTTCATTCTTCATATCCTCATTCCAAAGATTTCT 414545
Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413
|| |||||| ||| | | ||| || || || | ||| || ||||| ||||| |||||
Sbjct 414546 TTCAGTTAAATCTCGCAACAAATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCT 414605
Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473
| || ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||
Sbjct 414606 TCTTGTATAAATATTACTGGTATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGC 414665
Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG-- 62531
||| ||||| || ||||||||||| | | |||| ||||| || ||| ||||| |
Sbjct 414666 AGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCGAATACC--ATGTTTAGCA 414723
Query 62532 ATTTTATCTTTTAGATG-TTCCCAATTCCAAAGATC 62566
||||| |||||| ||| || ||||| ||| | |||
Sbjct 414724 ATTTTTGCTTTTA-ATGTTTTCCAATCCCATAAATC 414758
Score = 125 bits (138), Expect = 9e-24
Identities = 221/314 (70%), Gaps = 6/314 (2%)
Strand=Plus/Plus
Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392
|| |||||||| ||||||||||| | || | | |||||| | |||||| ||||| |
Sbjct 415895 TTACCTGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACA 415954
Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452
||||| || | |||| || | ||| ||||| || ||||| | |||| || || |||
Sbjct 415955 TATATAGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 416014
Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512
||||| ||||| | ||| ||||| | ||| || |||| |||| ||||| | || | |
Sbjct 416015 TTATATACTCTGATCATAGGAATCAAACCATTAGATACACCAAGTGTACCAGCTAT-TGG 416073
Query 63513 CCT-CCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63570
| || || || |||||| | || | | || || || || || ||| |||| |
Sbjct 416074 TGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCCGATTTACTAA 416132
Query 63571 TTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTA 63629
| | ||| || |||||| || | ||| || ||||| ||||||||||| || |||||
Sbjct 416133 TAAGTGCACACTTTTTTAATGTATTATATATTCCTTCAATGCTATCATCTTCCATTGTTA 416192
Query 63630 AGTAGAAAACAGCT 63643
| || |||||| ||
Sbjct 416193 A-TAAAAAACAACT 416205
Score = 113 bits (124), Expect = 6e-20
Identities = 263/392 (67%), Gaps = 16/392 (4%)
Strand=Plus/Plus
Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847
|||| |||||||||||| | ||| || | || || |||| ||| ||||||||||| |
Sbjct 415180 TACCCATAGGTCTATGTTTAAAATTTGATACTTTTGCCTCTGAAATCGGATAATAATTGA 415239
Query 62848 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62904
|| |||| ||| | | ||| | | |||||| |||| | || || || ||
Sbjct 415240 CGTCGATAACTTTGTCTAAATTACGCGTAACAATT--TTTGTC-ACTTCTCGAAGCTTTT 415296
Query 62905 GAAAATCAAATCGCCCATCTAT-------TACAAACATGTTCAATGCAACAGATGCCAGA 62957
|||||||| || || || ||| ||||||||| || | |||| || || | |
Sbjct 415297 GAAAATCATATGTCCTAT-TATCAGAATTTACAAACATATTTACAGCAATTGAGGCTAAA 415355
Query 62958 TTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 63017
|| ||||| || | ||||| | | | ||| | || || ||||| || | |||||||
Sbjct 415356 TTGCACACTGCAATTTCATTTGGACTAGAATACTCTACAATTTCAGTACACAAATTACTA 415415
Query 63018 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63077
|||||||| ||||| ||||||| ||||| || || || ||| ||||||||
Sbjct 415416 CACTTGATTGTTCCCAAATTTTTATGATTTGATTTACGATTGCAATGATCTTTATAAAGC 415475
Query 63078 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 63137
|| | ||||| || ||||||| || | | | ||| ||| |||| | ||| |||
Sbjct 415476 ATATAAGGAGTTCCTGTTTCAACTTGGGCAACAAGAATAGCTGTCCATAATTCTCTAGCT 415535
Query 63138 TTTATTATAGATTTGTATCTCCTTTCTCTTTC 63169
| ||| | ||| ||| | |||||| |||
Sbjct 415536 TGAATTTGACGTTTATATAT--TTTCTCATTC 415565
Score = 96.9 bits (106), Expect = 4e-15
Identities = 183/269 (68%), Gaps = 8/269 (3%)
Strand=Plus/Plus
Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701
||||||||||| || | |||| | ||| ||| | || ||||| || || |||||
Sbjct 416269 CTAGACATTTGTTGTTGTATAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 416328
Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATG 63757
| ||| || | | ||| || || || ||| || ||||| || |||| ||||
Sbjct 416329 TAACGTTCTGATAAAAAATTATAAGTTTCTATAACTCTTTCTATGTCTTCACCATGGATG 416388
Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817
| ||||| || | ||||||||| || || ||||||||||||| ||| | |||
Sbjct 416389 ----GCAACTGCAACTCTCATTAACATATGTTGTGGTCTTTCAACAACTTTCCCATGTAT 416444
Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877
||| | ||||| |||| | ||||| |||||||||||||| || |||||||
Sbjct 416445 TTTTAGTAAGTAACTCCTTTCAAGCGTTTTGAAACCAAAATAGTTATAGCTGAAGTCTCT 416504
Query 63878 TTCGTAAATAATAACCGAATTGAGCTTAT 63906
|| ||||| || | || || | |||||
Sbjct 416505 ATCATAAATTATTGCAGAGTTTAACTTAT 416533
Score = 93.3 bits (102), Expect = 5e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 62621 TCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGC 62680
|||| ||| || ||||||| |||| || |||||| || | ||| || || ||||| ||
Sbjct 414934 TCCTTTATAGGTTTCATATGTACCTTTCTCCTCAGCAAGCTCACAGCTAGCTTCTAAAGC 414993
Query 62681 ACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAA 62740
|| |||||| | |||||||| |||| |||| || | ||||| || || |||||
Sbjct 414994 ACTGTAATATAACGTTTCAAATATCTGGATATTAAGCTTCTGTGCCTCTTCACTTTCAAA 415053
Query 62741 TGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791
|||||| | | || ||| || || || | |||||||| ||||||||
Sbjct 415054 TGGATATCGCATTAAAAGAAATGCATCTGCAAGACCTTGAACTCCAATACC 415104
Score = 91.5 bits (100), Expect = 2e-13
Identities = 122/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 63175 GAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCG 63234
|| |||| || ||| || || || |||||||||| | | | |||| |||| | |
Sbjct 415635 GAATATATAAAGCTTCAAATTCATCGCCCCAAACATCATGTAGACCAGGAGATTCGTGTG 415694
Query 63235 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63294
||||||| || ||| | | | | || | |||||||||||||| |||||||| ||||
Sbjct 415695 GACACATTAAACTCCATTTTTCATTATTCAAAACTCGTTTCATAAAAAGATCAGGTATCC 415754
Query 63295 AAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344
| | ||| ||||| ||||||| ||||| ||| || || |||||| ||
Sbjct 415755 ATAAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCCTTACCTGTAGTC 415804
>seq967
Length=1612715
Score = 141 bits (156), Expect = 1e-28
Identities = 154/203 (76%), Gaps = 1/203 (0%)
Strand=Plus/Minus
Query 33831 TTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890
||||| ||| |||| ||| ||| || || ||||| | | ||||||||| ||||| |
Sbjct 653259 TTTTC-TTAGCATCTGTAATATATGTGTCAATCAATAAAGAATACATTTCTGAATGTACA 653201
Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950
||||| ||||| | ||||| || || ||||| | ||||| || | ||| |||||| |
Sbjct 653200 TTTTCCATGGCAACTTGAAAGCCATAAAAACAACGTGCCTCTGTTACCTGTACTTCTTGA 653141
Query 33951 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAAT 34010
| ||||||||| | | ||||||||| |||||||||||| || |||||||| || |||
Sbjct 653140 CTAAATCGTTCAACAAGATTTTCATTAACTATTCCATCAGAAGCAGCAAAAAATGCTAAT 653081
Query 34011 ACATGTTTTATAAAATATTTTTC 34033
||||| |||||||| ||| ||
Sbjct 653080 ACATGAGATATAAAATGTTTCTC 653058
Score = 118 bits (130), Expect = 1e-21
Identities = 91/108 (84%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127
||||| | ||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 652949 TTAGAGAGGTCCACTTCTTCCACTGTCCAAAAAGATGCCTCAGCTTTTTTATACATATTC 652890
Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175
|| |||||| | |||| || || |||| |||||| ||| |||||||
Sbjct 652889 CAAATGTCAGGCCATTGAATAGGAAAAACAACAAACCTACGTGGATTT 652842
Score = 91.5 bits (100), Expect = 2e-13
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 33387 TTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATC 33446
|||| | | || ||||| || |||||||||||| || ||||| |||||| |||
Sbjct 653887 TTTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATTGGCACATA 653828
Query 33447 ATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 33506
| || || ||||| ||||| | || ||| || | ||| | || | |||||||||||||
Sbjct 653827 AGTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATTCTTGTTCA 653768
Query 33507 ATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAA 33566
|| || |||| | | ||||| || | || || | ||| |||| |
Sbjct 653767 ATTTTGACAGCATCTTTAATAATTGATGTGACTCGATCCGGAGGTGGTTTTTGTATAATG 653708
Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606
||||| ||||| ||||||||||||||||| || | ||||
Sbjct 653707 TGTTTGAACATTAAACATGCGAAATCGCAATGTAACCCCT 653668
Score = 86.0 bits (94), Expect = 8e-12
Identities = 156/228 (68%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
||||||||||| ||| | ||| ||| ||| || ||||| |||||||| || | || |
Sbjct 653559 CCTCGTCTCTAGAAATAAGTTCATTACTAAATGTAAGTCCTGGCATTAGACCTCTTTTCT 653500
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| | ||| || || |||||| || |||||||| |||||||| |
Sbjct 653499 TTAGCCAGAATATAGCAGCAAAACTGCCACTAAAGAAAATACCTTCTACCGCAGCAAATG 653440
Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 33780
||| | | ||| | | || || || || ||||| ||| ||||| | |
Sbjct 653439 CAACCACACGCTCAGGAAAGGTCGCACTTTCGTGAGTAATCCAATTTAATGCCCAGTTAG 653380
Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33828
| |||||| ||||| |||| |||| || || ||||| | | |||
Sbjct 653379 CTTTCTTTGCGACACATGGCAAATTTTCGATCGCGTTAAACAAAAAGT 653332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628340591128080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |