Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq731 203 3e-47 seq967 143 2e-29 >seq731 Length=568950 Score = 203 bits (224), Expect = 3e-47 Identities = 233/310 (75%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 37045 TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTA 37104 || ||||||||||||| | | |||| |||||| || || | |||||| | |||||| Sbjct 414487 TGGATAGAACCATTATTTGCTATAATTTCATTCTTCATATCCTCATTCCAAAGATTTCTT 414546 Query 37105 CTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTT 37164 ||| |||| ||| | || |||||||| | ||||| ||||| || || |||||| Sbjct 414547 TCAGTTAAATCTCGCAACAAATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCTT 414606 Query 37165 CTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGAT 37224 |||||||| ||||| || ||||||||||| || ||||||||||| | || ||||| | Sbjct 414607 CTTGTATAAATATTACTGGTATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGCA 414666 Query 37225 GTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATT 37284 |||||||| || ||||| ||||| ||||| | ||||| | |||||| || |||| Sbjct 414667 GTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCGAATACCATGTTTAGCAATT 414726 Query 37285 CTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GT-TCTTTAACCACATATCAT 37342 | ||||| | ||||||||||||||||||||||| || | || |||||| |||| Sbjct 414727 TTTGCTTTTAATGTTTTCCAATCCCATAAATCTGTTGGAGTAACATT--CCACATGTCAT 414784 Query 37343 ATTGTAGAAT 37352 |||||| ||| Sbjct 414785 ATTGTAAAAT 414794 Score = 145 bits (160), Expect = 7e-30 Identities = 215/301 (71%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 38095 TTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 ||| ||||| | || ||| || || ||||| || ||||||||||||| ||| || | | Sbjct 415906 TTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACATATATAGCAAA 415965 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 ||||||||||||||||| || || |||| || ||||| |||| |||||||||| ||| Sbjct 415966 TGCTCCTGGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTATTATATACTCT 416025 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 | |||||| | | |||||||||| || | |||| | ||| ||||| | || Sbjct 416026 GATCATAGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTACCTCTTGC 416085 Query 38274 TCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA-AGCGCATT 38332 ||| ||| | || | ||| || ||||| || | ||| || ||| || || | Sbjct 416086 TCGAATACAATGTACATTAAGTCCAATACCACCAGC-CGATTTACTAATAAGTGCACACT 416144 Query 38333 GTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAAC 38392 |||||| |||| | |||| ||||| || || ||||| | |||| || || |||||||| Sbjct 416145 TTTTTAATGTATTATATATTCCTTCAATGCTATCATCTTCCATTGTTAATAAAAAACAAC 416204 Query 38393 T 38393 | Sbjct 416205 T 416205 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 36857 CCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATAT 36916 ||| | ||||||| ||||||||||| |||| |||| | ||| || ||| |||||| Sbjct 414206 CCATTTTCCATCCATAAAAATGCATTGATGTCAATTTTTCTGTTGTTGGTTTAGCTATAT 414265 Query 36917 ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAA 36976 | | | |||||| |||||||||||| ||||| | || |||||||||| ||| | Sbjct 414266 GAACATTTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAGA 414325 Query 36977 TACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAAT 37036 | |||||| | ||| |||||||| |||||||| | ||| | || |||||||| || Sbjct 414326 TTATTTTTTGTGGTATTTCCCAAACTGTTTTATAAAGCATTTTCAAATCATCTGGTATAT 414385 Score = 98.7 bits (108), Expect = 9e-16 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 37674 ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTT 37733 ||| ||||| || | | | ||| || ||| ||| || || |||| ||||| || | Sbjct 415322 ATTTACAAACATATTTACAGCAATTGAGGCTAAATTGCACACTGCAATTTCAT-TTGG-- 415378 Query 37734 ACTA-AAT--TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCT 37790 |||| ||| | || ||| || ||||| | |||||| | | |||||||||||||| | Sbjct 415379 ACTAGAATACTCTACAATTTCAGTACACAAATTACTACACTTGATTGTTCCCAAATTTTT 415438 Query 37791 TTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTAT 37850 ||||| ||||| ||| ||| ||||||||| || ||||| || |||||| ||| | Sbjct 415439 ATGATTTGATTTACGATTGCAATGATCTTTATAAAGCATATAAGGAGTTCCTGTTTCAAC 415498 Query 37851 TTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAA 37891 ||| || | | ||||| | ||||||| ||| |||| || Sbjct 415499 TTGGGCAACAAGAATAGCTGTCCATAATTCTCTAGCTTGAA 415539 Score = 98.7 bits (108), Expect = 9e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 37927 ATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGA 37986 |||||||| | ||| |||| ||||| ||||| || || ||| ||||| |||| Sbjct 415637 ATATATAAAGCTTCAAATTCATCGCCCCAAACATCATGTAGACCAGGAGATTCGTGTGGA 415696 Query 37987 CACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCAT 38046 ||||||| | ||||| ||||| || || |||| |||||| | |||||||| |||| Sbjct 415697 CACATTAAACTCCATTTTTCATTATTCAAAACTCGTTTCATAAAAAGATCAGGTATCCAT 415756 Query 38047 AATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCT 38088 || ||| |||||| ||| | | ||||| |||||| || ||| Sbjct 415757 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCCTTACCT 415798 >seq967 Length=1612715 Score = 143 bits (158), Expect = 2e-29 Identities = 174/236 (74%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938 |||||| || |||| | | |||||| || || |||||| ||||||||||||||| | | Sbjct 653259 TTTTCT-TAGCATCTGTAATATATGTGTCAATCAATAAAGAATACATTTCTGAATGTACA 653201 Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACA 11998 |||||||| || | |||||| ||||| ||||| |||||||||| |||||| || | Sbjct 653200 TTTTCCATGGCAACTTGAAAGCCATAAAAACAACGTGCCTCTGTTACCTGTACTTCTTGA 653141 Query 11999 TAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGT 12058 ||||| ||| | | ||| ||||| || || |||||| || ||||||||||||| | Sbjct 653140 CTAAATCGTTCAACAAGATTTTCATTAACTATTCCATCAGAAGCAGCAAAAAATGCTAAT 653081 Query 12059 ATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 | ||| |||||| | ||| || | | |||||| || ||| ||| || ||| Sbjct 653080 ACATGAGATATAAAATGTTTCTCATTGTCAGTTAAACGATTCCAGTCAAATATATC 653025 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || |||| ||| ||||| ||| | | ||||||||||| || ||||| ||||| || || Sbjct 653890 ACCTTTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATTGGCAC 653831 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | || ||||| ||||| | || || || | ||| |||| ||||| || | | Sbjct 653830 ATAAGTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATTCTTGT 653771 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || || || ||||| | || || || || | ||| || |||| |||| Sbjct 653770 TCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGATCCGGAGGTGGTTTTTGTATA 653711 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | ||||| ||||||||||| || ||||| |||||||| || Sbjct 653710 ATGTGTTTGAACATTAAACATGCGAAATCGCAATGTAACCC 653670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| |||||||| || ||||||||| |||||| | ||| ||||| | |||| || Sbjct 653561 AACCT-CGTCTCTAGAAATAAGTTCATTACTAAATGTAAGTCCTGGCATTAGACCTCTTT 653503 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 | |||| ||| |||||||||||||| ||| |||||| || || || || || |||| Sbjct 653502 TCTTTAGCCAGAATATAGCAGCAAAACTGCCACTAAAGAAAATACCTTCTACCGCAGCAA 653443 Query 11769 ATGCTACTACTCTTTCTCCATA-----TACCTTGTTGCTAGATATCCATTTTCTGGCCCA 11823 |||| || || | || | | || || || || ||||| ||| ||||| Sbjct 653442 ATGCAACCACACGCTCAGGAAAGGTCGCACTTTCGTG--AGTAATCCAATTTAATGCCCA 653385 Query 11824 ATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 | |||||||||| || ||| || |||| || |||||||| ||| Sbjct 653384 GTTAGCTTTCTTTGCGACACATGGCAAATTTTCGATCGCGTTAAACAAA 653336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467426044921840