Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09]
187,611 sequences; 596,278,454 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq731 203 3e-47
seq967 143 2e-29
>seq731
Length=568950
Score = 203 bits (224), Expect = 3e-47
Identities = 233/310 (75%), Gaps = 4/310 (1%)
Strand=Plus/Plus
Query 37045 TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTA 37104
|| ||||||||||||| | | |||| |||||| || || | |||||| | ||||||
Sbjct 414487 TGGATAGAACCATTATTTGCTATAATTTCATTCTTCATATCCTCATTCCAAAGATTTCTT 414546
Query 37105 CTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTT 37164
||| |||| ||| | || |||||||| | ||||| ||||| || || ||||||
Sbjct 414547 TCAGTTAAATCTCGCAACAAATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCTT 414606
Query 37165 CTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGAT 37224
|||||||| ||||| || ||||||||||| || ||||||||||| | || ||||| |
Sbjct 414607 CTTGTATAAATATTACTGGTATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGCA 414666
Query 37225 GTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATT 37284
|||||||| || ||||| ||||| ||||| | ||||| | |||||| || ||||
Sbjct 414667 GTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCGAATACCATGTTTAGCAATT 414726
Query 37285 CTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GT-TCTTTAACCACATATCAT 37342
| ||||| | ||||||||||||||||||||||| || | || |||||| ||||
Sbjct 414727 TTTGCTTTTAATGTTTTCCAATCCCATAAATCTGTTGGAGTAACATT--CCACATGTCAT 414784
Query 37343 ATTGTAGAAT 37352
|||||| |||
Sbjct 414785 ATTGTAAAAT 414794
Score = 145 bits (160), Expect = 7e-30
Identities = 215/301 (71%), Gaps = 3/301 (1%)
Strand=Plus/Plus
Query 38095 TTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153
||| ||||| | || ||| || || ||||| || ||||||||||||| ||| || | |
Sbjct 415906 TTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACATATATAGCAAA 415965
Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213
||||||||||||||||| || || |||| || ||||| |||| |||||||||| |||
Sbjct 415966 TGCTCCTGGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTATTATATACTCT 416025
Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273
| |||||| | | |||||||||| || | |||| | ||| ||||| | ||
Sbjct 416026 GATCATAGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTACCTCTTGC 416085
Query 38274 TCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA-AGCGCATT 38332
||| ||| | || | ||| || ||||| || | ||| || ||| || || |
Sbjct 416086 TCGAATACAATGTACATTAAGTCCAATACCACCAGC-CGATTTACTAATAAGTGCACACT 416144
Query 38333 GTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAAC 38392
|||||| |||| | |||| ||||| || || ||||| | |||| || || ||||||||
Sbjct 416145 TTTTTAATGTATTATATATTCCTTCAATGCTATCATCTTCCATTGTTAATAAAAAACAAC 416204
Query 38393 T 38393
|
Sbjct 416205 T 416205
Score = 109 bits (120), Expect = 5e-19
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 36857 CCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATAT 36916
||| | ||||||| ||||||||||| |||| |||| | ||| || ||| ||||||
Sbjct 414206 CCATTTTCCATCCATAAAAATGCATTGATGTCAATTTTTCTGTTGTTGGTTTAGCTATAT 414265
Query 36917 ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAA 36976
| | | |||||| |||||||||||| ||||| | || |||||||||| ||| |
Sbjct 414266 GAACATTTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAGA 414325
Query 36977 TACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAAT 37036
| |||||| | ||| |||||||| |||||||| | ||| | || |||||||| ||
Sbjct 414326 TTATTTTTTGTGGTATTTCCCAAACTGTTTTATAAAGCATTTTCAAATCATCTGGTATAT 414385
Score = 98.7 bits (108), Expect = 9e-16
Identities = 157/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 37674 ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTT 37733
||| ||||| || | | | ||| || ||| ||| || || |||| ||||| || |
Sbjct 415322 ATTTACAAACATATTTACAGCAATTGAGGCTAAATTGCACACTGCAATTTCAT-TTGG-- 415378
Query 37734 ACTA-AAT--TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCT 37790
|||| ||| | || ||| || ||||| | |||||| | | |||||||||||||| |
Sbjct 415379 ACTAGAATACTCTACAATTTCAGTACACAAATTACTACACTTGATTGTTCCCAAATTTTT 415438
Query 37791 TTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTAT 37850
||||| ||||| ||| ||| ||||||||| || ||||| || |||||| ||| |
Sbjct 415439 ATGATTTGATTTACGATTGCAATGATCTTTATAAAGCATATAAGGAGTTCCTGTTTCAAC 415498
Query 37851 TTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAA 37891
||| || | | ||||| | ||||||| ||| |||| ||
Sbjct 415499 TTGGGCAACAAGAATAGCTGTCCATAATTCTCTAGCTTGAA 415539
Score = 98.7 bits (108), Expect = 9e-16
Identities = 119/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 37927 ATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGA 37986
|||||||| | ||| |||| ||||| ||||| || || ||| ||||| ||||
Sbjct 415637 ATATATAAAGCTTCAAATTCATCGCCCCAAACATCATGTAGACCAGGAGATTCGTGTGGA 415696
Query 37987 CACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCAT 38046
||||||| | ||||| ||||| || || |||| |||||| | |||||||| ||||
Sbjct 415697 CACATTAAACTCCATTTTTCATTATTCAAAACTCGTTTCATAAAAAGATCAGGTATCCAT 415756
Query 38047 AATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCT 38088
|| ||| |||||| ||| | | ||||| |||||| || |||
Sbjct 415757 AAAGCATAAAATAATTCTCTTGCTCTATTTTCTTCCTTACCT 415798
>seq967
Length=1612715
Score = 143 bits (158), Expect = 2e-29
Identities = 174/236 (74%), Gaps = 1/236 (0%)
Strand=Plus/Minus
Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938
|||||| || |||| | | |||||| || || |||||| ||||||||||||||| | |
Sbjct 653259 TTTTCT-TAGCATCTGTAATATATGTGTCAATCAATAAAGAATACATTTCTGAATGTACA 653201
Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACA 11998
|||||||| || | |||||| ||||| ||||| |||||||||| |||||| || |
Sbjct 653200 TTTTCCATGGCAACTTGAAAGCCATAAAAACAACGTGCCTCTGTTACCTGTACTTCTTGA 653141
Query 11999 TAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGT 12058
||||| ||| | | ||| ||||| || || |||||| || ||||||||||||| |
Sbjct 653140 CTAAATCGTTCAACAAGATTTTCATTAACTATTCCATCAGAAGCAGCAAAAAATGCTAAT 653081
Query 12059 ATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114
| ||| |||||| | ||| || | | |||||| || ||| ||| || |||
Sbjct 653080 ACATGAGATATAAAATGTTTCTCATTGTCAGTTAAACGATTCCAGTCAAATATATC 653025
Score = 102 bits (112), Expect = 8e-17
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491
|| |||| ||| ||||| ||| | | ||||||||||| || ||||| ||||| || ||
Sbjct 653890 ACCTTTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATTGGCAC 653831
Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551
|| | || ||||| ||||| | || || || | ||| |||| ||||| || | |
Sbjct 653830 ATAAGTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATTCTTGT 653771
Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611
|| || || || ||||| | || || || || | ||| || |||| ||||
Sbjct 653770 TCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGATCCGGAGGTGGTTTTTGTATA 653711
Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652
| ||||| ||||||||||| || ||||| |||||||| ||
Sbjct 653710 ATGTGTTTGAACATTAAACATGCGAAATCGCAATGTAACCC 653670
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/229 (70%), Gaps = 8/229 (3%)
Strand=Plus/Minus
Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708
||||| |||||||| || ||||||||| |||||| | ||| ||||| | |||| ||
Sbjct 653561 AACCT-CGTCTCTAGAAATAAGTTCATTACTAAATGTAAGTCCTGGCATTAGACCTCTTT 653503
Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768
| |||| ||| |||||||||||||| ||| |||||| || || || || || ||||
Sbjct 653502 TCTTTAGCCAGAATATAGCAGCAAAACTGCCACTAAAGAAAATACCTTCTACCGCAGCAA 653443
Query 11769 ATGCTACTACTCTTTCTCCATA-----TACCTTGTTGCTAGATATCCATTTTCTGGCCCA 11823
|||| || || | || | | || || || || ||||| ||| |||||
Sbjct 653442 ATGCAACCACACGCTCAGGAAAGGTCGCACTTTCGTG--AGTAATCCAATTTAATGCCCA 653385
Query 11824 ATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872
| |||||||||| || ||| || |||| || |||||||| |||
Sbjct 653384 GTTAGCTTTCTTTGCGACACATGGCAAATTTTCGATCGCGTTAAACAAA 653336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467426044921840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |