Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq731 197 2e-45 seq967 127 3e-24 >seq731 Length=568950 Score = 197 bits (218), Expect = 2e-45 Identities = 210/275 (76%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||| || || ||| || ||| ||||| |||||| || || |||||||| | ||||| Sbjct 414486 CTGGATAGAACCATTATTTGCTATAATTTCATTCTTCATATCCTCATTCCAAAGATTTCT 414545 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 || |||||| ||| | | ||| ||||| || | |||||| ||||| ||||| ||||| Sbjct 414546 TTCAGTTAAATCTCGCAACAAATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCT 414605 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 | || ||||||||||||||||| ||||| | |||||||||||||||||||||||| || Sbjct 414606 TCTTGTATAAATATTACTGGTATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGC 414665 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG-- 65324 ||| ||||| || ||||||||||| | | |||| ||||| || ||| ||||| | Sbjct 414666 AGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCGAATACC--ATGTTTAGCA 414723 Query 65325 ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359 ||||| |||||| | || ||||| ||| | ||| Sbjct 414724 ATTTTTGCTTTTAATGTTTTCCAATCCCATAAATC 414758 Score = 120 bits (132), Expect = 4e-22 Identities = 220/315 (70%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 66126 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAG 66185 || |||||||| ||||||||||| | || | | |||||| |||||| ||||| | Sbjct 415895 TTACCTGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACA 415954 Query 66186 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 66245 ||||| || | |||| || | ||| ||||| || ||||| | |||| || || ||| Sbjct 415955 TATATAGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 416014 Query 66246 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 66305 ||||| ||||| | ||| ||||| | |||||| ||| |||| || || || ||| | Sbjct 416015 TTATATACTCTGATCATAGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 416072 Query 66306 --CTTCCACTTGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 66362 | || ||||| |||||| | || | | || || || || || ||| |||| Sbjct 416073 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCCGATTTACTA 416131 Query 66363 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTT 66421 || | ||| || |||||| |||| ||| || || || || |||||||| || |||| Sbjct 416132 ATAAGTGCACACTTTTTTAATGTATTATATATTCCTTCAATGCTATCATCTTCCATTGTT 416191 Query 66422 AAGTAGAAAACAGCT 66436 || || |||||| || Sbjct 416192 AA-TAAAAAACAACT 416205 Score = 105 bits (116), Expect = 9e-18 Identities = 260/391 (66%), Gaps = 14/391 (4%) Strand=Plus/Plus Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 |||| |||||||||||| | ||| || | || || |||| ||| ||||||||||| | Sbjct 415180 TACCCATAGGTCTATGTTTAAAATTTGATACTTTTGCCTCTGAAATCGGATAATAATTGA 415239 Query 65641 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 65697 || |||| ||| | | ||| | | |||||| |||| | || || || || Sbjct 415240 CGTCGATAACTTTGTCTAAATTACGCGTAACAATT--TTTGTC-ACTTCTCGAAGCTTTT 415296 Query 65698 GAAAATCAAATCGC------TCATCTATTACAAACATGTTCAATGCAACAGATGCCAGAT 65751 |||||||| || | ||| |||||||||| || | |||| || || | || Sbjct 415297 GAAAATCATATGTCCTATTATCAGAATTTACAAACATATTTACAGCAATTGAGGCTAAAT 415356 Query 65752 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 65811 | || || || | ||||| | | | ||| | || || ||||| || | |||||||| Sbjct 415357 TGCACACTGCAATTTCATTTGGACTAGAATACTCTACAATTTCAGTACACAAATTACTAC 415416 Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 65871 ||||||| ||||| ||||||| ||||| || || || ||| |||||||| | Sbjct 415417 ACTTGATTGTTCCCAAATTTTTATGATTTGATTTACGATTGCAATGATCTTTATAAAGCA 415476 Query 65872 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 65931 | | ||||| || ||||||| || | | | ||| ||| |||| | ||| ||| | Sbjct 415477 TATAAGGAGTTCCTGTTTCAACTTGGGCAACAAGAATAGCTGTCCATAATTCTCTAGCTT 415536 Query 65932 TTATTATAGATTTGTATCTCTTTTCTCTTTC 65962 || | || | ||| | ||||||| ||| Sbjct 415537 GAAT--TTGACGTTTATATATTTTCTCATTC 415565 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||| || || || |||||||||| | | |||||| |||| | |||||||| || Sbjct 415648 TTCAAATTCATCGCCCCAAACATCATGTAGACCAGGAGATTCGTGTGGACACATTAAACT 415707 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| | | | | || | |||||||||||||| |||||||| ||||| | ||| ||| Sbjct 415708 CCATTTTTCATTATTCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGCATAAAA 415767 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 66137 ||| ||||| | ||||| ||| || || |||||| || Sbjct 415768 TAATTCTCTTGCTCTATTTTCTTCCTTACCTGTAGTC 415804 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 65414 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 65473 |||| ||| || || |||| |||| || |||||| || ||||| || || ||||| || Sbjct 414934 TCCTTTATAGGTTTCATATGTACCTTTCTCCTCAGCAAGCTCACAGCTAGCTTCTAAAGC 414993 Query 65474 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 65533 || |||||| | ||||| || |||| |||| || | ||||| || || ||||| Sbjct 414994 ACTGTAATATAACGTTTCAAATATCTGGATATTAAGCTTCTGTGCCTCTTCACTTTCAAA 415053 Query 65534 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584 |||||| | | || ||| || ||||| | |||||||| |||||||| Sbjct 415054 TGGATATCGCATTAAAAGAAATGCATCTGCAAGACCTTGAACTCCAATACC 415104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 181/269 (67%), Gaps = 8/269 (3%) Strand=Plus/Plus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 ||||||||||| || | |||| | ||| ||| | || ||||| || || ||||| Sbjct 416269 CTAGACATTTGTTGTTGTATAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 416328 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATG 66550 | ||| || | | ||| || || || ||| || ||||| || |||| |||| Sbjct 416329 TAACGTTCTGATAAAAAATTATAAGTTTCTATAACTCTTTCTATGTCTTCACCATGGATG 416388 Query 66551 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 66610 | ||||| || | ||||||||| || || ||||||||||| | || | ||| Sbjct 416389 ----GCAACTGCAACTCTCATTAACATATGTTGTGGTCTTTCAACAACTTTCCCATGTAT 416444 Query 66611 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 66670 ||| | ||||| |||| | ||||| |||||||||||||| || ||||||| Sbjct 416445 TTTTAGTAAGTAACTCCTTTCAAGCGTTTTGAAACCAAAATAGTTATAGCTGAAGTCTCT 416504 Query 66671 TTCGTAAATAATAACCGAGTTGAGTTTAT 66699 || ||||| || | ||||| | |||| Sbjct 416505 ATCATAAATTATTGCAGAGTTTAACTTAT 416533 >seq967 Length=1612715 Score = 127 bits (140), Expect = 3e-24 Identities = 103/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 ||||| | ||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct 652949 TTAGAGAGGTCCACTTCTTCCACTGTCCAAAAAGATGCCTCAGCTTTTTTATACATATTC 652890 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTTTTGCAAGGATT 36763 || |||||| | ||||||| ||||||| |||||| ||| | |||||| | || | | Sbjct 652889 CAAATGTCAGGCCATTGAATAGGAAAAACAACAAACCTACGTGGATTTTCTTTTAGTAAT 652830 Query 36764 GGTTC 36768 ||||| Sbjct 652829 GGTTC 652825 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 35955 TATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATG 36014 || ||| |||| | | || ||||| || |||||||||||| |||||||| |||||| Sbjct 653895 TACAAACCTTTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATT 653836 Query 36015 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 36074 ||| | || || ||||| ||||| | || ||| || | ||| | || | ||||| Sbjct 653835 GGCACATAAGTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATT 653776 Query 36075 CTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGG-- 36132 |||||||||| ||| || ||| | ||||| ||| | ||| || | ||||| Sbjct 653775 CTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGATCCGGA---GGTGGTT 653719 Query 36133 ATACAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 36182 | |||| ||||| ||||| ||||||||||||||||| |||| |||| Sbjct 653718 TTTGTATAATGTGTTTGAACATTAAACATGCGAAATCGCAATGTAACCCCT 653668 Score = 86.0 bits (94), Expect = 8e-12 Identities = 156/228 (68%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||||||| ||| | ||| || ||| || ||||| |||||||| || | || | Sbjct 653559 CCTCGTCTCTAGAAATAAGTTCATTACTAAATGTAAGTCCTGGCATTAGACCTCTTTTCT 653500 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| | ||||| ||| ||||||||| |||||||| || ||||| | Sbjct 653499 TTAGCCAGAATATAGCAGCAAAACTGCCACTAAAGAAAATACCTTCTACCGCAGCAAATG 653440 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 36356 ||| | | ||| | | ||||| || || ||||| ||| ||||| | | Sbjct 653439 CAACCACACGCTCAGGAAAGGTCGCACTTTCGTGAGTAATCCAATTTAATGCCCAGTTAG 653380 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 36404 | |||||| ||||| |||| | || || || ||||| | | ||| Sbjct 653379 CTTTCTTTGCGACACATGGCAAATTTTCGATCGCGTTAAACAAAAAGT 653332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656629294285240