Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq731 217 2e-51 seq967 152 7e-32 >seq731 Length=568950 Score = 217 bits (240), Expect = 2e-51 Identities = 236/311 (76%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||| || || ||| || ||| ||||| |||||| || || |||||||| | ||||| Sbjct 414486 CTGGATAGAACCATTATTTGCTATAATTTCATTCTTCATATCCTCATTCCAAAGATTTCT 414545 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 || |||||| ||| | | ||| ||||| || | |||||| ||||| ||||| ||||| Sbjct 414546 TTCAGTTAAATCTCGCAACAAATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCT 414605 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 | || ||||||||||||||||||||||| | || |||||||||||||||||||| || Sbjct 414606 TCTTGTATAAATATTACTGGTATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGC 414665 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG-- 79203 ||| ||||| |||||||||||||| | | |||| ||||| || ||| ||| | | Sbjct 414666 AGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCGAATACC--ATGTTTAGCA 414723 Query 79204 ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCA 79263 ||||| |||||| | || ||||||||| | ||| | || ||||||||| | ||| Sbjct 414724 ATTTTTGCTTTTAATGTTTTCCAATCCCATAAATCTGTTGGAGTAACATTCCACATGTCA 414783 Query 79264 TATTGTAGAAT 79274 ||||||| ||| Sbjct 414784 TATTGTAAAAT 414794 Score = 129 bits (142), Expect = 8e-25 Identities = 222/315 (70%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || |||||||| ||||||||||| | || | | |||||| | |||||| ||||| | Sbjct 415895 TTACCTGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACA 415954 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 ||||| || | |||| |||| ||| ||||| || ||||| | |||| || || ||| Sbjct 415955 TATATAGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 416014 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 ||||| ||||| | ||| ||||| | |||||| ||| |||| || || || ||| | Sbjct 416015 TTATATACTCTGATCATAGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 416072 Query 80185 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 80241 | || || || |||||| | || | | || || || || || ||| |||| Sbjct 416073 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCCGATTTACTA 416131 Query 80242 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA-TGTT 80300 || | ||| || |||||| |||| ||| || || || ||||||||||| || |||| Sbjct 416132 ATAAGTGCACACTTTTTTAATGTATTATATATTCCTTCAATGCTATCATCTTCCATTGTT 416191 Query 80301 AAGTAGAAAACAGCT 80315 || || |||||| || Sbjct 416192 AA-TAAAAAACAACT 416205 Score = 107 bits (118), Expect = 3e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 79850 TATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGAC 79909 ||||||| ||| || || || ||||||||||| | || |||||| |||||| |||| Sbjct 415638 TATATAAAGCTTCAAATTCATCGCCCCAAACATCATGTAGACCAGGAGATTCGTGTGGAC 415697 Query 79910 ACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 79969 |||| || ||| | | ||| || | |||||||||||||| |||||||| ||||| | Sbjct 415698 ACATTAAACTCCATTTTTCATTATTCAAAACTCGTTTCATAAAAAGATCAGGTATCCATA 415757 Query 79970 GAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 80016 ||| ||||| ||||| | ||||| || || || |||||| || Sbjct 415758 AAGCATAAAATAATTCTCTTGCTCTATTTTCTTCCTTACCTGTAGTC 415804 Score = 100 bits (110), Expect = 4e-16 Identities = 260/392 (66%), Gaps = 16/392 (4%) Strand=Plus/Plus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| |||||||||||| | ||| || | || || |||| ||| ||||||||||| | Sbjct 415180 TACCCATAGGTCTATGTTTAAAATTTGATACTTTTGCCTCTGAAATCGGATAATAATTGA 415239 Query 79520 TATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 79576 || |||| ||| | | ||| | | || ||| |||| | || || || || Sbjct 415240 CGTCGATAACTTTGTCTAAATTACGCGTAACAATT--TTTGTC-ACTTCTCGAAGCTTTT 415296 Query 79577 GAAAATCAAATCGTCCATCTAT-------TACAAACATGTTCAACGCGACAGATGCCAGA 79629 |||||||| || |||| ||| ||||||||| || | || | || || | | Sbjct 415297 GAAAATCATAT-GTCCTATTATCAGAATTTACAAACATATTTACAGCAATTGAGGCTAAA 415355 Query 79630 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTA 79689 || || || || | ||||| | | | ||| | || |||||||| || | |||||| Sbjct 415356 TTGCACACTGCAATTTCATTTGGACTAGAATACTCTACAATTTCAGTACACAAATTACTA 415415 Query 79690 CACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 79749 ||||| || ||||| ||||||| ||||| || || || ||| |||||||| Sbjct 415416 CACTTGATTGTTCCCAAATTTTTATGATTTGATTTACGATTGCAATGATCTTTATAAAGC 415475 Query 79750 ATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 79809 || | ||||| || ||||||| || | | | ||| ||| |||| | ||| ||| Sbjct 415476 ATATAAGGAGTTCCTGTTTCAACTTGGGCAACAAGAATAGCTGTCCATAATTCTCTAGCT 415535 Query 79810 TTTATTATAGACTTGTATCTCTTTTCTCTTTC 79841 | || | ||| | ||| | ||||||| ||| Sbjct 415536 TGAAT--TTGACGTTTATATATTTTCTCATTC 415565 Score = 96.9 bits (106), Expect = 5e-15 Identities = 183/269 (68%), Gaps = 8/269 (3%) Strand=Plus/Plus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||||||||| || | |||| | ||| ||| | || ||||| || || ||||| Sbjct 416269 CTAGACATTTGTTGTTGTATAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 416328 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATG 80429 | ||| || | | ||| || || || ||| || |||||| || |||| |||| Sbjct 416329 TAACGTTCTGATAAAAAATTATAAGTTTCTATAACTCTTTCTATGTCTTCACCATGGATG 416388 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 | || || || | ||||||||| || || ||||||||||| | || || ||| Sbjct 416389 ----GCAACTGCAACTCTCATTAACATATGTTGTGGTCTTTCAACAACTTTCCCATGTAT 416444 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 ||| | |||||| |||| | ||||| |||||||||||||| || ||||||| Sbjct 416445 TTTTAGTAAGTAACTCCTTTCAAGCGTTTTGAAACCAAAATAGTTATAGCTGAAGTCTCT 416504 Query 80550 TTCGTAAATAATAACCGAGTTGAGTTTAT 80578 || ||||| || | ||||| | |||| Sbjct 416505 ATCATAAATTATTGCAGAGTTTAACTTAT 416533 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 79293 TCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGC 79352 |||| | || |||||||| | |||| || || || | ||||| || || ||||| || Sbjct 414934 TCCTTTATAGGTTTCATATGTACCTTTCTCCTCAGCAAGCTCACAGCTAGCTTCTAAAGC 414993 Query 79353 TCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAA 79412 | |||||| | ||||| || |||| |||| || | ||||| ||| || ||||| Sbjct 414994 ACTGTAATATAACGTTTCAAATATCTGGATATTAAGCTTCTGTGCCTCTTCACTTTCAAA 415053 Query 79413 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 |||||| | | || ||| || ||||| | |||||||| |||||||| Sbjct 415054 TGGATATCGCATTAAAAGAAATGCATCTGCAAGACCTTGAACTCCAATACC 415104 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| ||| ||||| || || || ||||| || || || |||| || ||||| | Sbjct 416852 CACTAAAGCTTTTCTTTGTCTCTTTATGAAGATTCGAGACTGCAATTCGTGCAGCTAATA 416911 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | |||||||||||||||| || || ||| ||||| |||| ||||| ||| | || | Sbjct 416912 TTGCATAATCTGGATGTTTAGTTGTCATAGTTGCTGCAGTTTCAGCTGCAAGATTATCTA 416971 Query 80798 ATTC 80801 |||| Sbjct 416972 ATTC 416975 >seq967 Length=1612715 Score = 152 bits (168), Expect = 7e-32 Identities = 176/236 (75%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 50209 TTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 50268 ||||| ||| |||| ||| ||| || || ||||| | | ||||||||| ||||| | Sbjct 653259 TTTTC-TTAGCATCTGTAATATATGTGTCAATCAATAAAGAATACATTTCTGAATGTACA 653201 Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328 ||||| ||||| | ||||| || || ||||| | ||||| || | ||| |||||| | Sbjct 653200 TTTTCCATGGCAACTTGAAAGCCATAAAAACAACGTGCCTCTGTTACCTGTACTTCTTGA 653141 Query 50329 CAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 50388 | |||||||||| | | ||||||||| |||||||| ||| || |||||||| || ||| Sbjct 653140 CTAAATCGTTCAACAAGATTTTCATTAACTATTCCATCAGAAGCAGCAAAAAATGCTAAT 653081 Query 50389 ACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 ||||| |||||||||||| || ||| |||| |||||| ||| ||||| Sbjct 653080 ACATGAGATATAAAATGTTTCTCATTGTCAGTTAAACGATTCCAGTCAAATATATC 653025 Score = 114 bits (126), Expect = 2e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 ||||| | || |||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct 652949 TTAGAGAGGTCCACTTCTTCCACTGTCCAAAAAGATGCCTCAGCTTTTTTATACATATTC 652890 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || |||||| | |||| || || |||| |||||| ||| ||||||| Sbjct 652889 CAAATGTCAGGCCATTGAATAGGAAAAACAACAAACCTACGTGGATTT 652842 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 49757 TATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATG 49816 || ||| |||| | | || ||||| || ||||||||| || |||||||| |||||| Sbjct 653895 TACAAACCTTTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATT 653836 Query 49817 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATT 49876 ||| | || || ||||| ||||| | || ||| || | ||| | || | ||||| Sbjct 653835 GGCACATAAGTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATT 653776 Query 49877 CTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGAT 49936 |||||||||| || |||||| | ||||| ||| | || || | ||| | Sbjct 653775 CTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGATCCGGAGGTGGTTTTT 653716 Query 49937 GCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 | | | ||||| ||||| ||||||||||||||||| || | |||| Sbjct 653715 GTATAATGTGTTTGAACATTAAACATGCGAAATCGCAATGTAACCCCT 653668 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||||| ||| ||||| || ||| || ||||| |||||||| || | || | Sbjct 653559 CCTCGTCTCTAGAAATAAGTTCATTACTAAATGTAAGTCCTGGCATTAGACCTCTTTTCT 653500 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| | ||||| ||| |||||| || |||||||| || ||||| | Sbjct 653499 TTAGCCAGAATATAGCAGCAAAACTGCCACTAAAGAAAATACCTTCTACCGCAGCAAATG 653440 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 50158 |||| | | ||| | | | || || || || ||||| ||| ||||| | | Sbjct 653439 CAACCACACGCTCAGGAAAGGTCGCACTTTCGTGAGTAATCCAATTTAATGCCCAGTTAG 653380 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 | |||||| ||||| |||| |||| || || ||||| | | ||| Sbjct 653379 CTTTCTTTGCGACACATGGCAAATTTTCGATCGCGTTAAACAAAAAGT 653332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716584360902040