Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq967 114 1e-20 >seq967 Length=1612715 Score = 114 bits (126), Expect = 1e-20 Identities = 143/190 (75%), Gaps = 7/190 (4%) Strand=Plus/Minus Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 ||| |||| |||| || | || ||| ||||| ||||| | ||| ||||||||| || Sbjct 653265 TATACCTTTTCTT-AGCATCTGTAATATATGTGTCAATCAATAAAGAATACATTTCTGAA 653207 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTA 14235 |||| |||||||| || | ||||| |||||||| || | || || | ||| |||| Sbjct 653206 TGTACATTTTCCATGGCAACTTGAAAGCCATAAAAACAACGTGCCTCTGTTACC--TGTA 653149 Query 14236 CTTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 |||| || |||| || ||| | | ||||||||||||||| |||||| ||| |||||| Sbjct 653148 CTTCTTGACTAAA-TCGTTCAACAAGATTTTCATTAACTATTCCATCAGAAGCAGCAAAA 653090 Query 14295 AATGCCAATA 14304 ||||| |||| Sbjct 653089 AATGCTAATA 653080 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 13668 ATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATAT 13727 ||| | || || | ||| |||| ||||| || |||||||| |||| ||| ||||||||| Sbjct 653896 ATACAAACCTTTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATAT 653837 Query 13728 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAAT 13787 || |||| | | || ||||| ||||| | || ||||| | | ||||||||| Sbjct 653836 TGGCACATAAGTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAAT 653777 Query 13788 TCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTC-ATTAGAAGGAGG 13846 |||| ||| || ||||| ||||| ||||| ||| | ||| || | ||| || Sbjct 653776 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGA----CTCGATCCGGAGGTGG 653721 Query 13847 ATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 | || || | ||||| || |||||||| || ||||| ||||| | |||| Sbjct 653720 TTTTTGTATAATGTGTTTGAACATTAAACATGCGAAATCGCAATGTAACCCCT 653668 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 |||||||| || | ||| | || ||||| ||||| ||||||||||| | || |||| Sbjct 654057 TTTTGATACTCTCCTACTTTCTTCTCAAAAAAGTTCGTTTTACCTTCTAAAGAAATATGC 653998 Query 13641 TCCATAAAATCAAATGGATTTATTGACATA 13670 ||||||||||||||||||||| |||||| Sbjct 653997 TCCATAAAATCAAATGGATTTTCAGACATA 653968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478602971877400