Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq731 192 8e-44 seq967 156 6e-33 >seq731 Length=568950 Score = 192 bits (212), Expect = 8e-44 Identities = 210/279 (75%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| || || ||| || ||| ||||| ||| || || || |||||||| | ||||| Sbjct 414486 CTGGATAGAACCATTATTTGCTATAATTTCATTCTTCATATCCTCATTCCAAAGATTTCT 414545 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 || |||||| ||| | | ||||||||| || | |||||| ||||| ||||| ||||| Sbjct 414546 TTCAGTTAAATCTCGCAACAAATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCT 414605 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 | || ||||||||||||||||| ||||| | ||||||||||||||||||||||| || Sbjct 414606 TCTTGTATAAATATTACTGGTATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGC 414665 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 ||| ||||| || ||||||||||| | | || | ||||| || ||||||| || Sbjct 414666 AGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCGAATACCATGTTTAGCAAT 414725 Query 71289 TTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 ||| |||||| | || ||||| ||| | ||| | ||| Sbjct 414726 TTTTGCTTTTAATGTTTTCCAATCCCATAAATCTGTTGG 414764 Score = 123 bits (136), Expect = 3e-23 Identities = 221/316 (70%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 || |||||||| ||||||||||| | || | | |||||| | |||||| ||||| | Sbjct 415895 TTACCTGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACA 415954 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 ||||| || | |||| || | ||| ||||| || ||||| | |||| || || ||| Sbjct 415955 TATATAGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 416014 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 72267 ||||| ||||| | ||| ||||| | |||||| ||| ||||| || || || ||| | Sbjct 416015 TTATATACTCTGATCATAGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 416072 Query 72268 --CTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 72323 | || || || ||||| | || ||| || || || || || ||| |||| Sbjct 416073 GTGTACCTCTTGCTCGAATACAATGTACATT--AAGTCCAATACCACCAGCCGATTTACT 416130 Query 72324 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGT 72382 || | ||| || |||||| |||| ||| || || || || |||||||| || ||| Sbjct 416131 AATAAGTGCACACTTTTTTAATGTATTATATATTCCTTCAATGCTATCATCTTCCATTGT 416190 Query 72383 TAAGTAGAAAACAGCT 72398 ||| || |||||| || Sbjct 416191 TAA-TAAAAAACAACT 416205 Score = 113 bits (124), Expect = 6e-20 Identities = 263/392 (67%), Gaps = 16/392 (4%) Strand=Plus/Plus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| |||||||| ||| | ||| || | || || |||| ||| ||||||||||| | Sbjct 415180 TACCCATAGGTCTATGTTTAAAATTTGATACTTTTGCCTCTGAAATCGGATAATAATTGA 415239 Query 71603 TATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 71659 || |||| ||| | | ||| | | || ||| |||| | || || || || Sbjct 415240 CGTCGATAACTTTGTCTAAATTACGCGTAACAATT--TTTGTC-ACTTCTCGAAGCTTTT 415296 Query 71660 GAAAATCAAATCTCCCATCTAT-------TACAAACACGTTCAAGGCAACAGATGCCAGA 71712 |||||||| || ||| || ||| |||||||| || | |||| || || | | Sbjct 415297 GAAAATCATATGTCCTAT-TATCAGAATTTACAAACATATTTACAGCAATTGAGGCTAAA 415355 Query 71713 TTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTA 71772 || || || || | ||||| | | | ||| | || ||||||||| || | ||||||| Sbjct 415356 TTGCACACTGCAATTTCATTTGGACTAGAATACTCTACAATTTCAGTACACAAATTACTA 415415 Query 71773 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 71832 |||||||| ||||| ||||||| ||||| || || || ||| |||||||| Sbjct 415416 CACTTGATTGTTCCCAAATTTTTATGATTTGATTTACGATTGCAATGATCTTTATAAAGC 415475 Query 71833 ATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 71892 ||| | ||||| || ||||||| || | | | ||| ||| |||| | ||| ||| Sbjct 415476 ATATAAGGAGTTCCTGTTTCAACTTGGGCAACAAGAATAGCTGTCCATAATTCTCTAGCT 415535 Query 71893 TTTATTATATTCTTGTATCTCTTTTCTCTTTC 71924 | ||| | | | ||| | ||||||| ||| Sbjct 415536 TGAATTTGA--CGTTTATATATTTTCTCATTC 415565 Score = 93.3 bits (102), Expect = 6e-14 Identities = 172/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||||||||| || | |||| | ||| ||| | || ||||| || || ||||| Sbjct 416269 CTAGACATTTGTTGTTGTATAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 416328 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATG 72512 | ||| || | | ||| || || || ||| || |||||| || |||| |||| Sbjct 416329 TAACGTTCTGATAAAAAATTATAAGTTTCTATAACTCTTTCTATGTCTTCACCATGGATG 416388 Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTAT 72572 | || || || | |||||||||||| || ||||||||||| | || || ||| Sbjct 416389 ----GCAACTGCAACTCTCATTAACATATGTTGTGGTCTTTCAACAACTTTCCCATGTAT 416444 Query 72573 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 72632 ||| | ||||| |||| | ||||| |||||||||||||| || ||||||| Sbjct 416445 TTTTAGTAAGTAACTCCTTTCAAGCGTTTTGAAACCAAAATAGTTATAGCTGAAGTCTCT 416504 Query 72633 TTCGTAAATAAT 72644 || ||||| || Sbjct 416505 ATCATAAATTAT 416516 Score = 89.7 bits (98), Expect = 7e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 71933 TATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGAC 71992 ||||||| ||| || || || |||||| ||| | || |||||| |||| | |||| Sbjct 415638 TATATAAAGCTTCAAATTCATCGCCCCAAACATCATGTAGACCAGGAGATTCGTGTGGAC 415697 Query 71993 ACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 72052 |||| || ||| | | ||| || |||||||||||||| |||||||| ||||| | Sbjct 415698 ACATTAAACTCCATTTTTCATTATTCAAAACTCGTTTCATAAAAAGATCAGGTATCCATA 415757 Query 72053 GAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 ||| ||||| ||||| | ||||| || || || |||||| || Sbjct 415758 AAGCATAAAATAATTCTCTTGCTCTATTTTCTTCCTTACCTGTAGTC 415804 >seq967 Length=1612715 Score = 156 bits (172), Expect = 6e-33 Identities = 177/236 (75%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 42314 TTTTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATG 42373 ||||| ||| |||| ||| |||||| || ||||| | | ||||||||||||||| | Sbjct 653259 TTTTC-TTAGCATCTGTAATATATGTGTCAATCAATAAAGAATACATTTCTGAATGTACA 653201 Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTA 42433 ||||| ||||| | ||||| || || ||||| | ||||| || |||||||||||| | Sbjct 653200 TTTTCCATGGCAACTTGAAAGCCATAAAAACAACGTGCCTCTGTTACCTGTACTTCTTGA 653141 Query 42434 CAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 42493 | |||||||||| | | |||||| || |||||||| ||| || |||||||| || ||| Sbjct 653140 CTAAATCGTTCAACAAGATTTTCATTAACTATTCCATCAGAAGCAGCAAAAAATGCTAAT 653081 Query 42494 ACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 ||||| |||||||| ||| || | ||||| |||||| ||| ||||| Sbjct 653080 ACATGAGATATAAAATGTTTCTCATTGTCAGTTAAACGATTCCAGTCAAATATATC 653025 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 ||||| | || |||||||| || |||||||| ||||| || || ||||||||||||||| Sbjct 652949 TTAGAGAGGTCCACTTCTTCCACTGTCCAAAAAGATGCCTCAGCTTTTTTATACATATTC 652890 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 || || ||| | ||||||| || |||| |||||| ||| ||||||| Sbjct 652889 CAAATGTCAGGCCATTGAATAGGAAAAACAACAAACCTACGTGGATTT 652842 Score = 93.3 bits (102), Expect = 6e-14 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41862 TATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATG 41921 || ||| |||| | | || ||||| || |||||||||||| | ||||| |||||| Sbjct 653895 TACAAACCTTTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATT 653836 Query 41922 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 41981 ||| | || || ||||| ||||| | || ||| || | ||| | || | ||||| Sbjct 653835 GGCACATAAGTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATT 653776 Query 41982 CTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG-- 42039 |||||||||| ||| || ||| | ||||| ||| | ||| || | ||||| Sbjct 653775 CTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGATCCGGA---GGTGGTT 653719 Query 42040 ATACAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 42089 | |||| ||||| ||||| ||||||||||||||||| || | |||| Sbjct 653718 TTTGTATAATGTGTTTGAACATTAAACATGCGAAATCGCAATGTAACCCCT 653668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669565286294360