Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4862 111 2e-19 seq5459 96.9 4e-15 seq3181 95.1 1e-14 seq967 84.2 2e-11 >seq4862 Length=216935 Score = 111 bits (122), Expect = 2e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | |||||||||||||| || || ||||| | ||||| |||||| Sbjct 39140 AACAAGATGGAGAGTAGATTCTTTTTGAATATTATAATCAGAAAGTGTGCGACCGTCTTC 39081 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | |||||| |||||| |||||| | ||| ||||| ||||| || ||||| || || Sbjct 39080 CAATTGTTTTCCAGCAAAGATCAATCTTTGTTGATCAGGAGGGATCCCTTCCTTATCTTG 39021 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| ||| | | ||| | ||| || | | ||||||||| | || | ||||| Sbjct 39020 AATTTTGGCTTTAACATTTTCAATCGTATCAGATGCTTCTACTTCCAGCGTAATAGTCTT 38961 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | ||| || ||||| ||||||||| Sbjct 38960 TCCAGTAAGTGTCTTGACGAAAATTTGCATA 38930 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||||||||| || || || || | || | ||||| | |||||| ||| Sbjct 40039 GTAGATTCTTTTTGAATATTATAGTCAGAAAGCGTACGACCATCTTCTAATTGTTTTCCA 39980 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | ||| ||||| || || || |||||||| || |||||| ||| Sbjct 39979 GCAAAGATCAGTCTTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTA 39920 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||| || | || ||||||||| | || | ||||| || || | ||| Sbjct 39919 ACATTTTCAATCGTATCAGAGGCTTCTACTTCCAGCGTAATAGTCTTTCCAGTAAGTGTC 39860 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| ||||||||| Sbjct 39859 TTGACGAAAATTTGCATA 39842 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||||||||| || || ||||| | |||| ||||| | ||||| ||| Sbjct 39811 GTAGATTCTTTTTGAATATTATAATCTGAAAGCGTGCGACCATCTTCTAACTGTTTTCCA 39752 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | ||| ||||| || || || |||||||| || |||||| ||| Sbjct 39751 GCAAAGATCAGTCTTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTA 39692 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||| || | || ||||||||| | || | ||||| || || | || Sbjct 39691 ACATTTTCAATCGTATCAGAGGCTTCTACTTCGAGCGTAATAGTCTTTCCAGTAAGGGTC 39632 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 39631 TTGACAAAAATTTGCATA 39614 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||||||||| || || || ||| | || | | ||||| | |||||||||| Sbjct 40267 GTAGATTCTTTTTGAATATTATAGTCGGAAAGCGTACGACAATCTTCTAATTGTTTACCA 40208 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | ||||||||| || || || ||||| || || |||||| ||| Sbjct 40207 GCAAAGATCAATCTTTGCTGATCAGGTGGAATACCTTCCTTATCTTGAATTTTGGCTTTA 40148 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | || || | || ||||||||| | || | ||||| || || | || Sbjct 40147 ACATTTTCAATTGTATCAGAGGCTTCTACTTCTAGCGTAATAGTCTTTCCAGTAAGGGTC 40088 Query 143168 TTTACGAATATTTGCAT 143184 || || || |||||||| Sbjct 40087 TTGACAAAAATTTGCAT 40071 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||||||||| || || ||||| | |||| ||||| || |||||||| Sbjct 40495 GTAGATTCTTTTTGAATATTATAATCAGAAAGCGTGCGACCATCTTCTAGCTGTTTACCG 40436 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | |||| | |||||||| || || || ||||| || || |||||| ||| Sbjct 40435 GCAAATATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTATCTTGAATTTTGGCTTTA 40376 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||| || | || ||||||||| | || | ||||| || || | || Sbjct 40375 ACATTTTCAATCGTATCAGAGGCTTCTACTTCGAGCGTAATAGTCTTTCCAGTAAGGGTC 40316 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 40315 TTGACAAAAATTTGCATA 40298 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||||||||| || || || ||| | || | ||||| | |||||||||| Sbjct 34568 GTAGATTCTTTTTGAATATTATAGTCGGAAAGCGTACGACCATCTTCTAATTGTTTACCA 34509 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | ||| ||||| || || || ||||| || || |||||| ||| Sbjct 34508 GCAAAGATCAATCTTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTTAGCTTTA 34449 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | || || | | || || || | || | || ||||| |||| |||| Sbjct 34448 ACGTTTTCAATTGTATCTGATGCCTCAACCTCGAGGGTTATTGTTTTGCCTGTCAGTGTT 34389 Query 143168 TTTACGAATATTTGCAT 143184 |||||||| || ||||| Sbjct 34388 TTTACGAAGATCTGCAT 34372 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||||||||| || || ||||| | |||| ||||| | ||||| ||| Sbjct 38899 GTAGATTCTTTTTGAATATTATAATCTGAAAGCGTGCGACCATCTTCTAACTGTTTTCCA 38840 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | ||| ||||| || || || ||||| || || |||||| ||| Sbjct 38839 GCAAAGATCAGTCTTTGTTGATCAGGTGGAATACCTTCCTTATCTTGAATTTTGGCTTTA 38780 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||| || | | ||||||||| | || | ||||| || || | || Sbjct 38779 ACATTTTCAATCGTATCAGATGCTTCTACTTCGAGCGTAATAGTCTTTCCAGTAAGGGTC 38720 Query 143168 TTTACGAATATTTGCAT 143184 || || || |||||||| Sbjct 38719 TTGACAAAAATTTGCAT 38703 >seq5459 Length=1306269 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || ||||| | ||| || || || || ||||| ||||| | || ||| || Sbjct 706345 CAATACCAAATGTAGTGTTGACTCCTTCTGGATGTTATAATCTGAAAGGGTTCTCCCATC 706404 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | |||||| |||||| |||||| ||| ||||| || ||||| || ||||||||||| Sbjct 706405 TTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTGTC 706464 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||||| ||||| | ||| | || || | | |||||| || | || | || Sbjct 706465 TTGGATTTTCGCTTTTACATTTTCTATTGTATCAGAAGCTTCTACCTCCAAGGTAATGGT 706524 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || | ||| || || || |||||||| Sbjct 706525 TTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 706557 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| || || || || || ||||| ||||| | || || ||||| Sbjct 705665 ACCAAGTGAAGAGTTGACTCCTTCTGGATGTTATAATCTGATAAAGTTCTTCCATCTTCC 705724 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || ||||| |||||| |||||| |||||||||||| || || || ||||| || || Sbjct 705725 AGCTGTTTCCCAGCAAAGATCAAACGTTGCTGATCAGGGGGAATTCCTTCCTTATCTTGG 705784 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || ||| || | | || | ||||| | | ||||||||| | || | ||||| Sbjct 705785 ATCTTTGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGTCTTT 705844 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || |||| |||||| || || |||||||| Sbjct 705845 CCTGTCAGTGTTTTGACAAAGATTTGCAT 705873 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || || || | || || || ||||| ||||| ||||| | || || || Sbjct 721325 CAATACCAAGTGGAGAGTTGACTCCTTTTGGATGTTATAATCTGAAAGGGTTCTTCCATC 721384 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||||| ||||| |||||| |||||||||||| || || || ||||||||||| Sbjct 721385 TTCTAACTGTTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTGGGATTCCTTCTTTGTC 721444 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||||| ||||| | ||| | ||||| | | ||| || || | ||| | || Sbjct 721445 TTGGATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACCTCTAAAGTGATGGT 721504 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || ||||| || || || || ||||| Sbjct 721505 TTTTCCTGTTAATGTCTTAACAAAGATCTGCAT 721537 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 || || ||||| | || ||||| || || ||||| ||||| | || ||| ||| Sbjct 705434 AATACCAAATGGAGAGTTGATTCCTTCTGAATGTTATAATCTGAAAGAGTCCTCCCATCT 705493 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || || ||||| |||||| |||||| |||||||||||| || || || ||||| || || Sbjct 705494 TCTAGCTGTTTGCCAGCAAAGATCAAACGTTGCTGATCAGGGGGAATTCCTTCCTTATCT 705553 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 || || ||| | | || | | ||| | | ||||||||| | || | || Sbjct 705554 TGTATCTTAGCTTTCACATTCTCTATTGAGTCAGAAGCTTCTACTTCCAAGGTGATGGTT 705613 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || |||| ||| || || || |||||||| Sbjct 705614 TTTCCTGTCAGTGTCTTAACAAAGATTTGCAT 705645 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || ||||| ||||| || || ||| ||||| || ||||| ||| Sbjct 706133 GTTGACTCCTTCTGGATGTTATAATCTGACAAAGTTCTCCCATCTTCCAGCTGTTTCCCA 706192 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| |||||||||||| || || || ||||| || || |||||| || Sbjct 706193 GCAAAGATCAAACGTTGCTGATCAGGGGGAATTCCTTCCTTATCTTGGATTTTTGCCTTC 706252 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || | | ||||||||| | || | || || || |||| ||| Sbjct 706253 ACATTCTCTATTGTATCAGAAGCTTCTACTTCCAAGGTAATGGTTTTTCCTGTCAGTGTC 706312 Query 143168 TTTACGAATATTTGCAT 143184 || || || |||||||| Sbjct 706313 TTGACAAAGATTTGCAT 706329 >seq3181 Length=1038259 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 142995 CTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 ||||||| || |||||||| || || | || | ||||| | ||| || |||||| | Sbjct 489040 CTTTTTGAATATTGTAATCTGACAGGGTACGTCCA-TCTTCTAATTGCTTTCCAGCAAAA 488982 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 || |||||||| ||||| || || ||||||||||| || ||||| ||| | | | Sbjct 488981 ATGAGACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTT 488922 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | || || | | ||||||||||| || | || || || ||||| ||||| || Sbjct 488921 TCAATAGTATCTGATGATTCTACTTCAAGGGTGATGGTTTTACCCGTCAAAGTTTTCACA 488862 Query 143174 AATATTTGCAT 143184 ||||| ||||| Sbjct 488861 AATATCTGCAT 488851 >seq967 Length=1612715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 50629 AAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTG 50688 ||||| || ||| | || ||| |||| ||||| || || ||||| || || | | || | Sbjct 653751 AAAGATGCTGTCAAAATTGAACAAGAATTTTTAACAGAAGCTTTGCCTGTTGAAATGATA 653810 Query 50689 GGCATGAAC-GCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTG 50742 ||||||||| ||| || | |||||| | || ||||| ||||||||||| |||||| Sbjct 653811 GGCATGAACTGCAAACTT-ATGTGCCAATATATTGAATTTGTTGCAGATAGATTG 653864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505825381517520