Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09]
187,611 sequences; 596,278,454 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq5459 100 2e-16
seq1782 82.4 6e-11
>seq5459
Length=1306269
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
|||| |||| | ||||| |||||||||| ||| || || || || ||||| |||||
Sbjct 709646 TTCCACCTCTGAGTCTCAATACCAAATGTATTGTTGACTCCTTCTGAATGTTATAATCCG 709705
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
| |||| | |||||||||||||||||| ||| | || | | ||| || || || |
Sbjct 709706 AAAGAGTTCTCCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTACAG 709765
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| || |||||||| ||||| ||| || | | | | ||| || |||
Sbjct 709766 AGATTCCATCTTTGTCTTGGATTTTAGCTTTTACATTCTCTATTGTATCAGAAGCTTCTA 709825
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|||| ||| |||||||| || | || ||||||||||| |||||||||
Sbjct 709826 CCTCCAAGGTGATGGTTTTTCCTGACAGTGTTTTGACAAAGATTTGCATT 709875
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
|||| |||| | ||||| |||||||||||||| || || || || ||||| |||||
Sbjct 706329 TTCCCCCTCTGAGTCTCAATACCAAATGTAGTGTTGACTCCTTCTGGATGTTATAATCTG 706388
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
| ||| | |||||| ||||||||||| ||| | || | | ||| || || |
Sbjct 706389 AAAGGGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 706448
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | ||||||||||| ||||| ||| || | | | | ||| || |||
Sbjct 706449 GAATTCCTTCTTTGTCTTGGATTTTCGCTTTTACATTTTCTATTGTATCAGAAGCTTCTA 706508
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|||| |||||||||||| || || | || |||||||| |||||||||
Sbjct 706509 CCTCCAAGGTAATGGTTTTTCCTGTGAGTGTCTTGACAAAGATTTGCATT 706558
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
||||||||| | ||| | ||||| || || || || || || || ||||| |||||
Sbjct 706101 TTCCTCCTCTGAGCCTTAGTACCAAGTGGAGAGTTGACTCCTTCTGGATGTTATAATCTG 706160
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
|| |||| | |||||||| ||||| || ||| | || | | || ||||| ||
Sbjct 706161 ACAAAGTTCTCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAAACGTTGCTGATCAGGGG 706220
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | ||||| || || |||||| ||||| | | | | ||| || |||
Sbjct 706221 GAATTCCTTCCTTATCTTGGATTTTTGCCTTCACATTCTCTATTGTATCAGAAGCTTCTA 706280
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
||||| |||||||||||| || |||| || |||||||| |||||||||
Sbjct 706281 CTTCCAAGGTAATGGTTTTTCCTGTCAGTGTCTTGACAAAGATTTGCATT 706330
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053
||||| |||||||||||||| || || || || ||||| ||||| | |||| | |
Sbjct 705887 CTCAATACCAAATGTAGTGTTGACTCCTTCTGAATGTTATAATCTGAAAGAGTTCTTCCA 705946
Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113
||||| || |||||||| ||| | || | | ||| || || || | |||||||||
Sbjct 705947 TCTTCTAACTGTTTGCCAGCAAAGATCAAGCGCTGCTGGTCTGGAGGGATTCCTTCTTTG 706006
Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173
|| || ||| ||||| | | | | ||| || ||| |||| ||| |||
Sbjct 706007 TCTTGGATCTTTGCCTTCACATTCTCTATTGTATCAGAAGCTTCTACCTCCAAGGTGATG 706066
Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
||||| || || | || || ||||| |||||||||
Sbjct 706067 GTTTTCCCTGTGAGGGTCTTTACAAAGATTTGCATT 706102
>seq1782
Length=598564
Score = 82.4 bits (90), Expect = 6e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|| |||| ||| | ||||| ||||| | ||||||||||||||| || || |||||
Sbjct 465821 CCACCTCTTAAACGTAACACTAAATGCAATGTAGATTCTTTTTGAATATTATAATCTGAT 465880
Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC 20094
| |||| | |||||| |||||||| || ||| |||| | |||||||||||
Sbjct 465881 AAAGTTCTGCCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTCTGTTGATC 465933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418627810064691
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |