Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq5459 100 2e-16 seq1782 82.4 6e-11 >seq5459 Length=1306269 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| | ||||| |||||||||| ||| || || || || ||||| ||||| Sbjct 709646 TTCCACCTCTGAGTCTCAATACCAAATGTATTGTTGACTCCTTCTGAATGTTATAATCCG 709705 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||||||||||||||| ||| | || | | ||| || || || | Sbjct 709706 AAAGAGTTCTCCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTACAG 709765 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | || |||||||| ||||| ||| || | | | | ||| || ||| Sbjct 709766 AGATTCCATCTTTGTCTTGGATTTTAGCTTTTACATTCTCTATTGTATCAGAAGCTTCTA 709825 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||| |||||||| || | || ||||||||||| ||||||||| Sbjct 709826 CCTCCAAGGTGATGGTTTTTCCTGACAGTGTTTTGACAAAGATTTGCATT 709875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| | ||||| |||||||||||||| || || || || ||||| ||||| Sbjct 706329 TTCCCCCTCTGAGTCTCAATACCAAATGTAGTGTTGACTCCTTCTGGATGTTATAATCTG 706388 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | |||||| ||||||||||| ||| | || | | ||| || || | Sbjct 706389 AAAGGGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 706448 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| ||||| ||| || | | | | ||| || ||| Sbjct 706449 GAATTCCTTCTTTGTCTTGGATTTTCGCTTTTACATTTTCTATTGTATCAGAAGCTTCTA 706508 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| |||||||||||| || || | || |||||||| ||||||||| Sbjct 706509 CCTCCAAGGTAATGGTTTTTCCTGTGAGTGTCTTGACAAAGATTTGCATT 706558 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| | ||| | ||||| || || || || || || || ||||| ||||| Sbjct 706101 TTCCTCCTCTGAGCCTTAGTACCAAGTGGAGAGTTGACTCCTTCTGGATGTTATAATCTG 706160 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || |||| | |||||||| ||||| || ||| | || | | || ||||| || Sbjct 706161 ACAAAGTTCTCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAAACGTTGCTGATCAGGGG 706220 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| || || |||||| ||||| | | | | ||| || ||| Sbjct 706221 GAATTCCTTCCTTATCTTGGATTTTTGCCTTCACATTCTCTATTGTATCAGAAGCTTCTA 706280 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| |||||||||||| || |||| || |||||||| ||||||||| Sbjct 706281 CTTCCAAGGTAATGGTTTTTCCTGTCAGTGTCTTGACAAAGATTTGCATT 706330 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 ||||| |||||||||||||| || || || || ||||| ||||| | |||| | | Sbjct 705887 CTCAATACCAAATGTAGTGTTGACTCCTTCTGAATGTTATAATCTGAAAGAGTTCTTCCA 705946 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||| || |||||||| ||| | || | | ||| || || || | ||||||||| Sbjct 705947 TCTTCTAACTGTTTGCCAGCAAAGATCAAGCGCTGCTGGTCTGGAGGGATTCCTTCTTTG 706006 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || || ||| ||||| | | | | ||| || ||| |||| ||| ||| Sbjct 706007 TCTTGGATCTTTGCCTTCACATTCTCTATTGTATCAGAAGCTTCTACCTCCAAGGTGATG 706066 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| || || | || || ||||| ||||||||| Sbjct 706067 GTTTTCCCTGTGAGGGTCTTTACAAAGATTTGCATT 706102 >seq1782 Length=598564 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| | ||||| ||||| | ||||||||||||||| || || ||||| Sbjct 465821 CCACCTCTTAAACGTAACACTAAATGCAATGTAGATTCTTTTTGAATATTATAATCTGAT 465880 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC 20094 | |||| | |||||| |||||||| || ||| |||| | ||||||||||| Sbjct 465881 AAAGTTCTGCCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTCTGTTGATC 465933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418627810064691