Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq4103 150 2e-31 seq5123 114 2e-20 >seq4103 Length=935674 Score = 150 bits (166), Expect = 2e-31 Identities = 224/314 (71%), Gaps = 8/314 (3%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| ||||| || |||||||| | |||||||| ||| ||||||| | ||||||| Sbjct 430083 ATTGGGATTTTCAAAAAATGGGAATTGGTGGACTGGATAAAGAATTTAGTGCTATTTTCC 430024 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || ||||||| || ||| || |||| ||||| | | |||| || ||||| | Sbjct 430023 GAAGAGCATTCGCATCTCGAGTTTTTCCACCAGAAATTGTTACTCAATTGGGTTGTAAGC 429964 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | |||||||||||| | |||| || || ||| ||||||||||||||||| || Sbjct 429963 ATGTTAAAGGAATTTTACTTTATGGTCCACCAGGTACAGGTAAAACATTAATGGCACGGC 429904 Query 164573 GCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | | ||||| | | || || ||||||||| ||||| ||| || | | Sbjct 429903 AAATAG-GAACTATGTTAAATGCTAGAGAACC--TAAAATTGTCAATGGCCCTCAAATTT 429847 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || |||||||||| || || ||||||||| |||||| || ||| || ||||||| Sbjct 429846 TGGACAAATATGTTGGAGAAAGTGAAGCTAATATTAGAAGATTATTTGCTGATGCTGAAG 429787 Query 164690 A--AGAACAAAAGA 164701 | || | |||||| Sbjct 429786 AGGAGGAGAAAAGA 429773 Score = 116 bits (128), Expect = 4e-21 Identities = 153/213 (72%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 164715 TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGA 164774 |||| ||||||| | ||| |||||||||| || |||||| |||| || || ||| Sbjct 429670 TAGTGGATTACATATAATTATTTTTGATGAAATTGATGCTATTTGTAAGTCTCGAGGTAG 429611 Query 164775 TAAT------ATTA------TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGA 164822 | | | || |||| ||| | || || ||||||||||| | ||||| || Sbjct 429610 TGTTGCCGGAAATACAGGAGTTCACGATACTGTCGTGAATCAGTTGCTCGCAAAAATTGA 429551 Query 164823 TGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAAT 164882 |||||| ||| |||||||||||| | || | |||||||| ||| || ||| | || Sbjct 429550 TGGTGTGGAACAATTAAATAATATTCTTGTTATTGGTATGACTAACAGAAGAGATATGAT 429491 Query 164883 TGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 ||| || ||||| |||||||||||| ||||||| Sbjct 429490 TGACGAAGCTTTGTTACGACCTGGTAGATTAGA 429458 >seq5123 Length=351926 Score = 114 bits (126), Expect = 2e-20 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 7142 TACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATT 7201 |||| || || | ||||| | ||| || |||||| || || |||||||||||||||| Sbjct 332414 TACCTTGCCCATTATAATCTGCATGCATATCTATATATTTTGCACCAAAATGTCTCCATT 332355 Query 7202 GAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTA 7261 |||| ||||||| ||| |||||||| |||||||| | || |||| || | || || Sbjct 332354 GAAATCCATAAACAGGCCCTAAATCTCCTTCTTCCCTATCTGTAAAACCAGAAGAATCTA 332295 Query 7262 AATTAGATTTTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAATTTAAAG 7321 || ||| | | |||||||||| || | | ||||| ||| | | | Sbjct 332294 AAAACACACGTGAGCTGTTTTCATCCCAAATGTGAATACCTTTTTCACTTAACTCTTTTG 332235 Query 7322 AATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTC 7381 |||||| ||||| ||| |||||||| | |||||| || | || | |||||| | || Sbjct 332234 CATTTGTTGATCCCCTAATAAACCATAACAATTCTTCCACAACGCCTCTCCAAAATACTC 332175 Query 7382 TTTTTGTAGTGAATAAAGGGA 7402 |||||| || |||| |||| Sbjct 332174 GTTTTGTTGTTAATAGTGGGA 332154 Score = 113 bits (124), Expect = 5e-20 Identities = 134/179 (75%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 6924 ATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTG 6983 |||||| || | |||||| ||||| || | ||||||||||| |||||||||| ||| Sbjct 332712 ATAAGATGCAATATTAAATGGTACTCCAAGACCCATATCTGCACTTCTTTGATAAAGTTG 332653 Query 6984 ACAAGATAAAATATTGTCTATAGCATAAAATTGACACAATACA-TGACATGGAGGTAAAA 7042 ||| ||||| || || | ||||||||||| |||| ||| ||||| ||||||| Sbjct 332652 ACATGATAACTCTTTATCATTCACATAAAATTGA-ACAAGACAGTGACAGGGAGGTAGGG 332594 Query 7043 CAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGA 7101 | || ||||||| ||||||||| |||||||||| ||| | ||| ||||| ||| Sbjct 332593 CCATTTGTGAAATATCAGCTGGATTCCATGCAGTCATTATAATTCTTCTGTCATTGGGA 332535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594474598227600